ArticleNucleic acids research1996
Common DNA structural features exhibited by eukaryotic ribosomal gene promoters.
Article in Nucleic acids research, 1996. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.
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20 citing papers in PubMed, 61 citations in OpenAlex.
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- A Deconvolution Protocol for ChIP-Seq Reveals Analogous Enhancer Structures on the Mouse and Human Ribosomal RNA Genes.G3 (Bethesda, Md.) · 2018Article
- Conserved Curvature of RNA Polymerase I Core Promoter Beyond rRNA Genes: The Case of the Tritryps.Genomics, proteomics & bioinformatics · 2015Article
- Thermodynamic and kinetic basis for recognition and repair of 8-oxoguanine in DNA by human 8-oxoguanine-DNA glycosylase.Nucleic acids research · 2011Article
- Mechanics of the IL2RA gene activation revealed by modeling and atomic force microscopy.PloS one · 2011Article
- Intrinsically bent DNA sites in the Drosophila melanogaster third chromosome amplified domain.Molecular genetics and genomics : MGG · 2009Article
- DNA sequence- and conformation-directed positioning of nucleosomes by chromatin-remodeling complexes.Proceedings of the National Academy of Sciences of the United States of America · 2007Article
- Atomic force microscopy of DNA in solution and DNA modelling show that structural properties specify the eukaryotic replication initiation site.Nucleic acids research · 2007Article
- DNA bending in the replication zone of the C3 DNA puff amplicon of Rhynchosciara americana (Diptera: Sciaridae).Molecular biology reports · 2006Article
- TBP-TAF complex SL1 directs RNA polymerase I pre-initiation complex formation and stabilizes upstream binding factor at the rDNA promoter.The Journal of biological chemistry · 2005Article
- Intrinsic curvature in the VP1 gene of SV40: comparison of solution and gel results.Biophysical journal · 2005Article
- Large-scale structural analysis of the core promoter in mammalian and plant genomes.Nucleic acids research · 2005Article
- Left-handedly curved DNA regulates accessibility to cis-DNA elements in chromatin.Nucleic acids research · 2003Article
- Computational approaches to identify promoters and cis-regulatory elements in plant genomes.Plant physiology · 2003Review
- A common feature shared by bent DNA structures locating in the eukaryotic promoter region.Molecular biology reports · 2001Article
- Modeling of DNA local parameters predicts encrypted architectural motifs in Xenopus laevis ribosomal gene promoter.Nucleic acids research · 2000Article
- Ecologic genomics of DNA: upstream bending in prokaryotic promoters.Genome research · 2000Article
- Short DNA fragments without sequence similarity are initiation sites for replication in the chromosome of the yeast Yarrowia lipolytica.Molecular biology of the cell · 1999Article
- Cyclin B-cdk1 kinase stimulates ORC- and Cdc6-independent steps of semiconservative plasmid replication in yeast nuclear extracts.Molecular and cellular biology · 1999Article
- In vitro transcription of pe38/polyhedrin hybrid promoters reveals sequences essential for recognition by the baculovirus-induced RNA polymerase and for the strength of very late viral promoters.Journal of virology · 1998Article
Corrections and comments
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Authors and funding
2 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Nucleotide sequences of DNA regions containing eukaryotic ribosomal promoters were analysed using strategies designed to reveal sequence-directed structural features. DNA curvature, duplex stability and pattern of twist angle variation were studied by computer modelling. Although ribosomal promoters are known to lack sequence homology (unless very closely related species are considered), investigation of these structural characteristics uncovered striking homologies in all the taxonomic groups examined so far. This wide conservation of DNA structures, while DNA sequence is not conserved, suggests that the determined structures are fundamental for ribosomal promoter function. Moreover, this result agrees well with the recent observations showing that RNA polymerase I transcription factors have not evolved as intensively as previously suspected.
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