Evidence map›Paper›PMID 8688583›Full record

ArticleJournal of assisted reproduction and genetics1996

Allele dropout in sequential PCR and FISH analysis of single cells (cell recycling).

S Rechitsky, M Freidine, Y Verlinsky, C M Strom

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Article in Journal of assisted reproduction and genetics, 1996. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Molecular diagnostics in preimplantation genetic diagnosis.The Journal of molecular diagnostics : JMD · 2002
    Review
  8. Article
  9. Article
  10. Article
  11. Allele dropout in polar bodies and blastomeres.Journal of assisted reproduction and genetics · 1998
    Article
  12. Preimplantation diagnosis of thalassemias.Journal of assisted reproduction and genetics · 1998
    Article
  13. Preimplantation genetic diagnosis.Journal of assisted reproduction and genetics · 1996
    Article
  14. Review: preimplantation diagnosis of inherited disease.Journal of inherited metabolic disease · 1996
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

S RechitskyReproductive Genetics Institute, Illinois Masonic Medical Center, Department of Obstetrics and Gynecology, Chicago 60657, USA.
M Freidine
Y Verlinsky
C M Strom

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeOur purpose was to investigate the feasability of using sequential PCR and FISH analysis of single cells for preimplantation diagnosis.

methodsProtocols for sequential PCR and FISH analysis of a single fibroblast (cell recycling) were optimized for six loci and the rates of allele specific dropout (ADO) were determined.

resultsConditions that allow reliable genotyping of single cells in lysis buffer were not optimal for amplifying fibroblasts fixed to coverslips. After optimizing conditions, we observed a success rate of 85% for both analyses in sequential PCR-FISH experiments in single cells for the four loci studied. The individual success rates for each technique revealed a slightly higher rate for FISH (91-95%) than for PCR (85-87%) for single cells on coverslips. The presence of two hybridization signals in FISH experiments demonstrated that the failure to amplify both alleles from heterozygous cells on coverslips was due to true ADO, and not the loss of chromosomal material. The ADO rate observed on coverslips varied between 10 and 14%, which is significantly higher than that observed in solution, even after meticulous optimization.

conclusionsSequential PCR and FISH analysis of single cells remains an attractive possibility. However, until the problem of the increased rate of ADO is resolved, cell recycling should be applied to clinical preimplantation genetic analysis.

Indexed as

AllelesArtifactsAmelogeninAnemia, Sickle CellBase SequenceCells, CulturedCystic FibrosisCystic Fibrosis Transmembrane Conductance RegulatorDental Enamel ProteinsDNADNA Mutational AnalysisDNA PrimersEvaluation Studies as TopicFeasibility StudiesFemaleFibroblastsAmelogeninCFTR protein, humanCystic Fibrosis Transmembrane Conductance RegulatorDental Enamel ProteinsDNADNA PrimersGenetic MarkersGlobinsIodide Peroxidasevon Willebrand Factor

Identifiers

PMID8688583

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.