Evidence map›Paper›PMID 8668536›Full record

ArticleNucleic acids research1996

An essential domain in Saccharomyces cerevisiae U14 snoRNA is absent in vertebrates, but conserved in other yeasts.

D A Samarsky, G S Schneider, M J Fournier

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Nucleic acids research, 1996. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. The Transcriptome ofFrontiers in cellular and infection microbiology · 2016
    Article
  6. Article
  7. Article
  8. Article
  9. Evolutionary patterns of non-coding RNAs.Theory in biosciences = Theorie in den Biowissenschaften · 2005
    Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Small RNA database.Nucleic acids research · 1997
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

D A SamarskyDepartment of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, MA 01003, USA.
G S Schneider
M J Fournier
University of Massachusetts Amherst · US

Funding

BIOSYNTHESIS OF TRANSFER, 4.5S &6S RIBONUCLEIC ACIDSR01GM019351 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI FOURNIER, MAURILLE J · 1985 to 2008
$3.3M
NIGMS NIH HHS GM-19351
6 · The paper itself

Abstract

U14 is a small nucleolar RNA (snoRNA) required for early cleavages of eukaryotic precursor rRNA. The U14 RNA from Saccharomyces cerevisiae is distinguished from its vertebrate homologues by the presence of a stem-loop domain that is essential for function. This element, known as the Y-domain, is located in the U14 sequence between two universal sequences that base pair with 18S rRNA. Sequence data obtained for the U14 homologues from four additional phylogenetically distinct yeasts showed the Y-domain is not unique to S.cerevisiae. Comparison of the five Y-domain sequences revealed a common stem-loop structure with a conserved loop sequence that includes eight invariant nucleotides. Conservation of these features suggests that the Y-domain is a recognition signal for an essential interaction. Several plant U14 RNAs were found to contain similar structures, though with an unrelated consensus sequence in the loop portion. The U14 gene from the most distantly related yeast, Schizosaccharomyces pombe, was found to be active in S.cerevisiae, showing that Y-domain function is conserved and that U14 function can be provided by variants in which the essential elements are embedded in dissimilar flanking sequences. This last result suggests that U14 function may be determined solely by the essential elements.

Indexed as

Conserved SequenceBase CompositionBase SequenceMolecular Sequence DataNucleic Acid ConformationPhylogenyPlantsRNA, FungalRNA, Ribosomal, 18SRNA, Small NuclearSaccharomyces cerevisiaeSchizosaccharomycesRNA, FungalRNA, Ribosomal, 18SRNA, Small Nuclear

Identifiers

PMID8668536
PMCPMC145897
OpenAlexW2003514630

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.