Evidence map›Paper›PMID 8654386›Full record

ArticleThe EMBO journal1996

The RNA 3' cleavage factors CstF 64 kDa and CPSF 100 kDa are concentrated in nuclear domains closely associated with coiled bodies and newly synthesized RNA.

W Schul, B Groenhout, K Koberna, Y Takagaki, A Jenny, E M Manders, I Raska, R van Driel, L de Jong

Abstract read
In one paragraph

Article in The EMBO journal, 1996. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed.

  1. Article
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  4. The host geneActa biochimica et biophysica Sinica · 2024
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  11. Intrinsically disordered proteins in the nucleus of human cells.Biochemistry and biophysics reports · 2015
    Article
  12. Article
  13. Review
  14. Article
  15. Orphan nuclear bodies.Cold Spring Harbor perspectives in biology · 2010
    Review
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

W SchulE.C. Slater Institute, Biocentrum, University of Amsterdam, The Netherlands.
B Groenhout
K Koberna
Y Takagaki
A Jenny
E M Manders
I Raska
R van Driel
L de Jong

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The cleavage stimulation factor (CstF), and the cleavage and polyadenylation specificity factor (CPSF) are necessary for 3'-terminal processing of polyadenylated mRNAs. To study the distribution of 3' cleavage factors in the nuclei of human T24 cells, monoclonal antibodies against the CstF 64 kDa subunit and against the CPSF 100 kDa subunit were used for immunofluorescent labelling. CstF 64 kDa and CPSF 100 kDa were distributed in a fibrogranular pattern in the nucleoplasm and, in addition, were concentrated in 1-4 bright foci. Double immunofluorescence labelling experiments revealed that the foci either overlapped with, or resided next to, a coiled body. Inhibition of transcription with alpha-amanitin or 5,6-dichloro-beta-D-ribofuranosyl-benzimidazole (DRB) resulted in the complete co-localization of coiled bodies and foci containing 3' cleavage factors. Electron microscopy on immunogold double-labelled cells revealed that the foci represent compact spherical fibrous structures, we named 'cleavage bodies', intimately associated with coiled bodies. We found that approximately 20% of the cleavage bodies contained a high concentration of newly synthesized RNA, whereas coiled bodies were devoid of nascent RNA. Our results suggest that the cleavage bodies that contain RNA are those that are adjacent to a coiled body. These findings reveal a dynamic and transcription-dependent interaction between different subnuclear domains, and suggest a relationship between coiled bodies and specific transcripts.

Indexed as

RNA Processing, Post-TranscriptionalAmanitinsCell CompartmentationCell NucleusFluorescent Antibody Technique, IndirectHumansmRNA Cleavage and Polyadenylation FactorsRNA-Binding ProteinsRNA, MessengerRNA Polymerase IITranscription, GeneticTumor Cells, CulturedAmanitinsmRNA Cleavage and Polyadenylation FactorsRNA-Binding ProteinsRNA, MessengerRNA Polymerase II

Identifiers

PMID8654386
PMCPMC450226

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.