Evidence map›Paper›PMID 8645173›Full record

ArticleThe Biochemical journal1996

Oct-1 [corrected] and Oct-2 DNA-binding site specificity is regulated in vitro by different kinases.

S J Grenfell, D S Latchman, N S Thomas

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in The Biochemical journal, 1996. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 30 citations in OpenAlex.

  1. Octamer-binding transcription factors: genomics and functions.Frontiers in bioscience (Landmark edition) · 2013
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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

S J GrenfellDepartment of Haematology, University College London Medical School, U.K.
D S Latchman
N S Thomas
University College London · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The transcription factors Oct-1 and Oct-2 bind differentially to three octamer binding sequences corresponding to the octamer binding site from the H2B promoter [ATGCTAATAA], a simple TAATGARAT motif, found in herpes simplex virus IE4/5 genes [GCGGTAATGAGAT], and a perfect consensus overlapping octamer/TAATGARAT motif [ATGCTAATGAGAT]. By comparing the effects of protein kinase A, protein kinase C and casein kinase 2 in vitro on the binding of Oct-1 and Oct-2 to the three motifs, we show that the actions of these kinases regulate Oct-1 and Oct-2 DNA binding independently of each other in a binding-site-specific manner. Inhibition of cellular phosphatases also regulate Oct-1 and Oct-2 DNA binding in a binding-site-specific manner. Both kinase and phosphatase activity are important for regulating the DNA binding activity of Oct-1 and Oct-2 because, in the presence of phosphatase inhibitors, protein kinase A attenuates the binding of both Oct-1 and Oct-2 to the octamer binding site but enhances binding when phosphatase inhibitors are omitted. Thus the DNA specificity of Oct-1 and Oct-2 can be regulated in vitro by the action of different kinases.

Indexed as

Base SequenceBinding SitesCasein Kinase IICell LineCyclic AMP-Dependent Protein KinasesDNADNA-Binding ProteinsEnzyme InhibitorsHost Cell Factor C1HumansIn Vitro TechniquesMolecular Sequence DataOctamer Transcription Factor-1Octamer Transcription Factor-2Phosphoric Monoester HydrolasesPhosphorylationCasein Kinase IICyclic AMP-Dependent Protein KinasesDNADNA-Binding ProteinsEnzyme InhibitorsHCFC1 protein, humanHost Cell Factor C1Octamer Transcription Factor-1Octamer Transcription Factor-2Phosphoric Monoester HydrolasesPOU2F1 protein, humanPOU2F2 protein, humanProtein Kinase CProtein Serine-Threonine KinasesTranscription Factors

Identifiers

PMID8645173
PMCPMC1217290
OpenAlexW2616831711

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.