Evidence map›Paper›PMID 8627776›Full record

ArticleJournal of virology1996

Position-dependent ATT initiation during plant pararetrovirus rice tungro bacilliform virus translation.

J Fütterer, I Potrykus, Y Bao, L Li, T M Burns, R Hull, T Hohn

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 1996. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
12.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 82 citations in OpenAlex.

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  8. Non-canonical translation in RNA viruses.The Journal of general virology · 2012
    Review
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  15. uORFs with unusual translational start codons autoregulate expression of eukaryotic ornithine decarboxylase homologs.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

J FüttererInstitute for Plant Sciences, Zürich, Switzerland.
I Potrykus
Y Bao
L Li
T M Burns
R Hull
T Hohn

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The expression of the rice tungro bacilliform virus open reading frame I was studied in transiently transfected protoplasts. Expression occurs despite the presence of a long leader sequence and the absence of a proper ATG initiation codon. Translation is initiated at an ATT codon. The efficiency of initiation in rice protoplasts depends strongly on the mechanism by which ribosomes reach this codon. From the effects of scanning-inhibiting structures inserted into different leader regions, it can be deduced that this mechanism is related to the ribosome shunt described for cauliflower mosaic virus 35S RNA. The process delivers initiation-competent ribosomes to the region downstream of the leader and is so precise that only the second of two potential start codons only 12 nucleotides apart is recognized. The ATT codon that is used when it is present downstream of the leader is hardly recognized as a start codon by ribosomes that reach it by scanning.

Indexed as

CodonOpen Reading FramesPeptide Chain Initiation, TranslationalBase SequenceCaulimovirusCells, CulturedChloramphenicol O-AcetyltransferaseDNA PrimersDNA, ViralMolecular Sequence DataOryzaPlasmidsPolymerase Chain ReactionProtein BiosynthesisProtoplastsRestriction MappingChloramphenicol O-AcetyltransferaseCodonDNA PrimersDNA, ViralRibonucleasesRNA, MessengerRNA, Viral

Identifiers

PMID8627776
PMCPMC190159
OpenAlexW2157744927

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.