Evidence map›Paper›PMID 8626339›Full record

ArticleJournal of bacteriology1996

Regulation by cyanate of the genes involved in carbon and nitrogen assimilation in the cyanobacterium Synechococcus sp. strain PCC 7942.

I Suzuki, T Sugiyami, T Omata

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 1996. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 47 citations in OpenAlex.

  1. Structural mechanism of Escherichia coli cyanase.Acta crystallographica. Section D, Structural biology · 2023
    Article
  2. Article
  3. Article
  4. Survivability of Wild-Type and Genetically EngineeredApplied biosafety : journal of the American Biological Safety Association · 2020
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  7. Review
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  12. Transcriptional activation of NtcA-dependent promoters of Synechococcus sp. PCC 7942 by 2-oxoglutarate in vitro.Proceedings of the National Academy of Sciences of the United States of America · 2002
    Article
  13. Nitrogen control in cyanobacteria.Journal of bacteriology · 2001
    Review
  14. Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

I SuzukiDepartment of Applied Biological Sciences, School of Agricultural Sciences, Nagoya University, Japan.
T Sugiyami
T Omata
Nagoya University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A mutant (M45) of the cyanobacterium Synechococcus sp. strain PCC 7942, which is defective in active transport of nitrate, was used for the studies of the nitrogen regulation of the genes involved in nitrate and CO2 assimilation. In a medium containing 30 mM nitrate as the nitrogen source, M45 grew under constant stress of nitrogen deficiency and accumulated a five-times-larger amount of the transcript of nirA, the gene for nitrite reductase, compared with nitrate-grown wild-type cells. By contrast, the level of the transcript of rbcL, the gene for the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase, was 40% of the wild-type level. Addition of ammonium to the culture of M45 abolished the accumulation of the nirA transcript and stimulated the accumulation of the rbcL transcript, showing that ammonium repressed and activated the transcription of nirA and rbcL, respectively. Glutamine, the initial product of ammonium fixation, also showed negative and positive effects on nirA and rbcL, respectively. One of the metabolites of glutamine, carbamoylphosphate, and its decomposition product, cyanate, were found to repress nirA and also to markedly activate rbcL. Cyanate negatively regulated another ammonium-repressible gene, glnA, but had no effect on the psbAI and rps1 genes. The effects of cyanate were not ascribable to the ammonium and CO, resulting from its decomposition. These findings suggested that cyanate may act as a regulator of the ammonium-responsive genes involved in carbon and nitrogen assimilation in the cyanobacterium.

Indexed as

Base SequenceBiological TransportCarbamyl PhosphateCarbonCarbon DioxideCyanatesCyanobacteriaEnzyme InhibitorsGene Expression Regulation, BacterialGenes, BacterialGlutamate-Ammonia LigaseGlutamineMolecular Sequence DataMutationNitratesNitrite ReductasesCarbamyl PhosphateCarbonCarbon DioxideCyanatesEnzyme InhibitorsGlutamate-Ammonia LigaseGlutamineNitratesNitrite ReductasesNitrogenPotassium Compoundspotassium nitrateQuaternary Ammonium CompoundsRibulose-Bisphosphate CarboxylaseRNA, BacterialRNA, Messenger

Identifiers

PMID8626339
PMCPMC177996
OpenAlexW2109746834

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.