Evidence map›Paper›PMID 8622670›Full record

ArticleMolecular and cellular biology1996

Silkworm TFIIIB binds both constitutive and silk gland-specific tRNA Ala promoters but protects only the constitutive promoter from DNase I cleavage.

L S Young, N Ahnert, K U Sprague

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 1996. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

L S YoungInstitute of Molecular Biology, University of Oregon, Eugene 97403-1229, USA.
N Ahnert
K U Sprague
University of Oregon · US

Funding

CONTROL OF TRNA GENE EXPRESSION IN BOMBYX MORIR01GM025388 · NIGMS · UNIVERSITY OF OREGON · PI SPRAGUE, KAREN U · 1985 to 1993
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MOLECULAR BASIS FOR SELECTIVE EXPRESSION OF TRNA GENESR01GM032851 · NIGMS · UNIVERSITY OF OREGON · PI SPRAGUE, KAREN U · 1985 to 1999
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NIGMS NIH HHS GM25388NIGMS NIH HHS GM32851
6 · The paper itself

Abstract

We have identified a complex between TFIIIB and the upstream promoter of silkworm tRNA Ala genes that is detectable by gel retardation and DNase I footprinting. Formation of this complex depends on the integrity of previously identified upstream promoter elements and on the presence of other silkworm transcription factors, either TFIIID or a fraction that contains both TFIIIC and TFIIID. We have used this complex to compare the interactions of TFIIIB with two kinds of tRNA Ala genes whose different in vitro transcription properties are conferred by the upstream segments of their promoters. These are the tRNA C Ala genes, which are transcribed constitutively, and the tRNA SG Ala genes, which are transcribed only in the silk gland. We find that TFIIIB binds tRNA SG Ala genes with lower affinity than it binds tRNA C Ala genes. In addition, the TFIIIB complex formed on tRNA SG Ala genes differ qualitatively from those formed on tRNA C Ala genes. Both the transcriptional activity of tRNA SG Ala complexes and the ability of the complexes to protect upstream DNA from DNase I digestion are reduced.

Indexed as

AnimalsBase SequenceBombyxCloning, MolecularDeoxyribonuclease IMolecular Sequence DataPromoter Regions, GeneticRNA, Transfer, AlaTranscription FactorsTranscription Factor TFIIIBDeoxyribonuclease IRNA, Transfer, AlaTranscription FactorsTranscription Factor TFIIIB

Identifiers

PMID8622670
PMCPMC231108
OpenAlexW1536068933

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.