Evidence map›Paper›PMID 8610117›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1996

Unexpected beta2-microglobulin sequence diversity in individual rainbow trout.

B P Shum, K Azumi, S Zhang, S R Kehrer, R L Raison, H W Detrich, P Parham

Open access · greenAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1996. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 72 citations in OpenAlex.

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  5. Primordial linkage of β2-microglobulin to the MHC.Journal of immunology (Baltimore, Md. : 1950) · 2011
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

B P ShumDepartment of Structural Biology, Standford University, CA 94305, USA.
K Azumi
S Zhang
S R Kehrer
R L Raison
H W Detrich
P Parham
Northeastern University · US

Funding

Origins of Diversity at Human Classical MHC Class I GenesR01AI031168 · NIAID · STANFORD UNIVERSITY · PI PARHAM, PETER R · 1991 to 2013
$3.8M
NIAID NIH HHS AI31168
6 · The paper itself

Abstract

For mammals beta2-microglobulin (beta2m), the light chain of major histocompatibility complex (MHC) class I molecules, is invariant (or highly conserved) and is encoded by a single gene unlinked to the MHC. We find that beta2m of a salmonid fish, the rainbow trout (Oncorhynchus mykiss), does not conform to the mammalian paradigm. Ten of 12 randomly selected beta2m cDNA clones from an individual fish have different nucleotide sequences. A complex restriction fragment length polymorphism pattern is observed with rainbow trout, suggesting multiple beta2m genes in the genome, in excess of the two genes expected from the ancestral salmonid tetraploidy. Additional duplication and diversification of the beta2m genes might have occurred subsequently. Variation in the beta2m cDNA sequences is mainly at sites that do not perturb the structure of the mature beta2m protein, showing that the observed diversity of the trout beta2m genes is not primarily a result of pathogen selection.

Indexed as

Genetic VariationPhylogenyPolymorphism, Restriction Fragment LengthAmino Acid SequenceAnimalsBase Sequencebeta 2-MicroglobulinConsensus SequenceDNA, ComplementaryDNA PrimersDNA ProbesGene LibraryHumansLiverMolecular Sequence DataOncorhynchus mykissbeta 2-MicroglobulinDNA, ComplementaryDNA PrimersDNA ProbesRNA, Messenger

Identifiers

PMID8610117
PMCPMC39709
OpenAlexW2014527443

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.