Evidence map›Paper›PMID 8601598›Full record

ArticleThe Journal of cell biology1996

Identification of a cytoplasm to vacuole targeting determinant in aminopeptidase I.

M N Oda, S V Scott, A Hefner-Gravink, A D Caffarelli, D J Klionsky

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 1996. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 103 citations in OpenAlex.

  1. The autophagy-specific exocyst subcomplex contributes to phagophore assembly site integrity by promoting phagophore expansion.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  2. Article
  3. Article
  4. Liquid-liquid phase separation in autophagy.The Journal of cell biology · 2020
    Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Selective autophagy in budding yeast.Cell death and differentiation · 2013
    Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. An overview of the molecular mechanism of autophagy.Current topics in microbiology and immunology · 2009
    Review
  17. Article
  18. Crystallization of Saccharomyces cerevisiae aminopeptidase 1, the major cargo protein of the Cvt pathway.Acta crystallographica. Section F, Structural biology and crystallization communications · 2007
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

M N OdaSection of Microbiology, University of California, Davis 95616, USA.
S V Scott
A Hefner-Gravink
A D Caffarelli
D J Klionsky
University of California, Davis · US

Funding

ALTERNATIVE VACUOLAR TARGETING MECHANISMS IN YEASTR01GM053396 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KLIONSKY, DANIEL J. · 1995 to 2018
$12.1M
TARGETING OF VACUOLAR PROTEINS IN YEASTR01DK043684 · NIDDK · UNIVERSITY OF CALIFORNIA DAVIS · PI KLIONSKY, DANIEL J. · 1991 to 1994
–
NIDDK NIH HHS DK43684NIGMS NIH HHS GM53396
6 · The paper itself

Abstract

Aminopeptidase I (API) is a soluble leucine aminopeptidase resident in the yeast vacuole (Frey, J., and K.H. Rohm. 1978. Biochim. Biophys. Acta. 527:31-41). The precursor form of API contains an amino-terminal 45-amino acid propeptide, which is removed by proteinase B (PrB) upon entry into the vacuole. The propeptide of API lacks a consensus signal sequence and it has been demonstrated that vacuolar localization of API is independent of the secretory pathway (Klionsky, D.J., R. Cueva, and D.S. Yaver. 1992. J. Cell Biol. 119:287-299). The predicted secondary structure for the API propeptide is composed of an amphipathic alpha-helix followed by a beta-turn and another alpha-helix, forming a helix-turn-helix structure. With the use of mutational analysis, we determined that the API propeptide is essential for proper transport into the vacuole. Deletion of the entire propeptide from the API molecule resulted in accumulation of a mature-sized protein in the cytosol. A more detailed examination using random mutagenesis and a series of smaller deletions throughout the propeptide revealed that API localization is severely affected by alterations within the predicted first alpha-helix. In vitro studies indicate that mutations in this predicted helix prevent productive binding interactions from taking place. In contrast, vacuolar import is relatively insensitive to alterations in the second predicted helix of the propeptide. Examination of API folding revealed that mutations that affect entry into the vacuole did not affect the structure of API. These data indicate that the API propeptide serves as a vacuolar targeting determinant at a critical step along the cytoplasm to vacuole targeting pathway.

Indexed as

Saccharomyces cerevisiae ProteinsAmino Acid SequenceAminopeptidasesBase SequenceBiological TransportCell CompartmentationCytoplasmFungal ProteinsHelix-Turn-Helix MotifsIntracellular MembranesMolecular Sequence DataMutagenesisProtein Sorting SignalsProtein Structure, SecondarySaccharomyces cerevisiaeVacuolesAminopeptidasesAPE1 protein, S cerevisiaeFungal ProteinsProtein Sorting SignalsSaccharomyces cerevisiae Proteins

Identifiers

PMID8601598
PMCPMC2120762
OpenAlexW2105137727

What OpenQuestion holds

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LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.