ArticleJournal of molecular evolution1995
Evolution of the active sequences of the HpaI short interspersed elements.
Article in Journal of molecular evolution, 1995. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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Who cites it
12 citing papers in PubMed, 27 citations in OpenAlex.
- Expansion of CORE-SINEs in the genome of the Tasmanian devil.BMC genomics · 2012Article
- PCR and magnetic bead-mediated target capture for the isolation of short interspersed nucleotide elements in fishes.International journal of molecular sciences · 2012Article
- Multiple source genes of HAmo SINE actively expanded and ongoing retroposition in cyprinid genomes relying on its partner LINE.BMC evolutionary biology · 2010Article
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- MH class IIalpha polymorphism in local and global adaptation of Arctic charr (Salvelinus alpinus L.).Immunogenetics · 2008Article
- Divergent long-terminal-repeat retrotransposon families in the genome of Paragonimus westermani.The Korean journal of parasitology · 2003Article
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- The 3' ends of tRNA-derived SINEs originated from the 3' ends of LINEs: a new example from the bovine genome.Journal of molecular evolution · 1997Article
- The 3' ends of tRNA-derived short interspersed repetitive elements are derived from the 3' ends of long interspersed repetitive elements.Molecular and cellular biology · 1996Article
- Characterization of species-specifically amplified SINEs in three salmonid species--chum salmon, pink salmon, and kokanee: the local environment of the genome may be important for the generation of a dominant source gene at a newly retroposed locus.Journal of molecular evolution · 1996Article
Corrections and comments
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Authors and funding
4 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Ninety-nine members of the salmonid HpaI and AvaIII families of short interspersed repetitive elements (SINEs) were aligned and a general consensus sequence was deduced. The presence of 26 correlated changes in nucleotides (diagnostic nucleotides) from those in the consensus sequence allowed us to divide the members of the HpaI family into 12 subfamilies and those of the AvaIII family into two subfamilies. On the basis of the average sequence divergences and the phylogenetic distributions of the subfamilies, the relative antiquity of the subfamilies and the process of sequential changes in the respective source sequences were inferred. Despite the higher mutation rates of CG dinucleotides in individual dispersed members, no hypermutability of CG positions was observed in changes in the source sequences. This result suggests that sequences of SINEs located in a nonmethylated or hypomethylated genomic region could have been selected as source sequences for retroposition and/or that some CG sites are the parts of recognition sequences of retropositional machineries.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.