Evidence map›Paper›PMID 8576961›Full record

ArticleJournal of molecular evolution1996

Flanking sequences of an Alu source stimulate transcription in vitro by interacting with sequence-specific transcription factors.

I Chesnokov, C W Schmid

Abstract read
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In one paragraph

Article in Journal of molecular evolution, 1996. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. LINEs, SINEs and other retroelements: do birds of a feather flock together?Frontiers in bioscience (Landmark edition) · 2012
    Review
  12. Review
  13. LINEs and SINEs of primate evolution.Evolutionary anthropology · 2010
    Article
  14. Review
  15. Article
  16. Article
  17. Cis-acting influences on Alu RNA levels.Nucleic acids research · 2000
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

I ChesnokovSection of Molecular and Cellular Biology, University of California, Davis 95616, USA.
C W Schmid

Funding

REPETITIVE DNA SEQUENCES IN THE HUMAN GENOMER01GM021346 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI SCHMID, CARL W · 1985 to 2002
$808k
NIGMS NIH HHS GM21346
6 · The paper itself

Abstract

An Alu source gene, called the EPL Alu, was previously isolated by a phylogenetic strategy. Sequences flanking the EPL Alu family member stimulate its RNA polymerase III (Pol III) template activity in vitro. One cis-acting element maps within a 40-nucleotide region immediately upstream to the EPL Alu. This same region contains an Ap1 site which, when mutated, abolishes the transcriptional stimulation provided by this region. The flanking sequence, as assayed by gel mobility shift, forms sequence-specific complexes with several nuclear factors including Ap1. These results demonstrate that an an ancestral Alu source sequence fortuitously acquired positive transcriptional control elements by insertion into the EPL locus, thereby providing biochemical evidence for a model which explains the selective amplification of Alu subfamilies.

Indexed as

Transcription, GeneticBase SequenceBinding SitesHeLa CellsHumansMolecular Sequence DataRepetitive Sequences, Nucleic AcidSequence AnalysisTranscription FactorsTranscription Factors

Identifiers

PMID8576961

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.