Evidence map›Paper›PMID 8571960›Full record

ArticleAmerican journal of human genetics1996

Gene structure, DNA methylation, and imprinted expression of the human SNRPN gene.

C C Glenn, S Saitoh, M T Jong, M M Filbrandt, U Surti, D J Driscoll, R D Nicholls

Open access · greenAbstract read
In one paragraph

Article in American journal of human genetics, 1996. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
16.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 236 citations in OpenAlex.

  1. Review
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  4. Does SpermBiomedicines · 2024
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  5. Epigenetics in rare neurological diseases.Frontiers in cell and developmental biology · 2024
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  9. UsingRNA biology · 2023
    Article
  10. Prader-Willi and Angelman Syndromes: Mechanisms and Management.The application of clinical genetics · 2023
    Review
  11. Article
  12. Cancers · 2021
    Review
  13. Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Article

22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

C C GlennR. C. Philips Research and Education Unit, Department of Pediatrics, University of Florida College of Medicine, Gainesville 32610, USA.
S Saitoh
M T Jong
M M Filbrandt
U Surti
D J Driscoll
R D Nicholls
Florida College · US

Funding

MOLECULAR STUDIES OF GENOMIC IMPRINTING IN HUMANSR01HD031491 · NICHD · UNIVERSITY OF PENNSYLVANIA · PI NICHOLLS, ROBERT D · 1994 to 2003
$1.3M
NICHD NIH HHS HD31491
6 · The paper itself

Abstract

The human SNRPN (small nuclear ribonucleoprotein polypeptide N) gene is one of a gene family that encode proteins involved in pre-mRNA splicing and maps to the smallest deletion region involved in the Prader-Willi syndrome (PWS) within chromosome 15q11-q13. Paternal only expression of SNRPN has previously been demonstrated by use of cell lines from PWS patients (maternal allele only) and Angelman syndrome (AS) patients (paternal allele only). We have characterized two previously unidentified 5' exons of the SNRPN gene and demonstrate that exons -1 and 0 are included in the full-length transcript. This gene is expressed in a wide range of somatic tissues and at high, approximately equal levels in all regions of the brain. Both the first exon of SNRPN (exon -1) and the putative transcription start site are embedded within a CpG island. This CpG island is extensively methylated on the repressed maternal allele and is unmethylated on the expressed paternal allele, in a wide range of fetal and adult somatic cells. This provides a quick and highly reliable diagnostic assay for PWS and AS, which is based on DNA-methylation analysis that has been tested on > 100 patients in a variety of tissues. Conversely, several CpG sites approximately 22 kb downstream of the transcription start site in intron 5 are preferentially methylated on the expressed paternal allele in somatic tissues and male germ cells, whereas these same sites are unmethylated in fetal oocytes. These findings are consistent with a key role for DNA methylation in the imprinted inheritance and subsequent gene expression of the human SNRPN gene.

Indexed as

AdolescentAdultAmino Acid SequenceAngelman SyndromeAutoantigensBase SequenceChildChild, PreschoolChromosome MappingCloning, MolecularCodon, InitiatorCpG IslandsDNAExonsFemaleGenomic ImprintingAutoantigensCodon, InitiatorDNARibonucleoproteins, Small NuclearsnRNP Core ProteinsSNRPN protein, human

Identifiers

PMID8571960
PMCPMC1914536
OpenAlexW2994096458

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.