Evidence map›Paper›PMID 8506952›Full record

ArticleThe American journal of pathology1993

Detection of clonal immunoglobulin gene rearrangements by polymerase chain reaction amplification and single-strand conformational polymorphism analysis.

T H Davis, C E Yockey, S P Balk

Open access · greenAbstract read
In one paragraph

Article in The American journal of pathology, 1993. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 55 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

T H DavisDepartment of Medicine, Beth Israel Hospital, Boston, MA 02215.
C E Yockey
S P Balk
Beth Israel Deaconess Hospital · US

Funding

HEMATOLOGY CAREER TRAINING PROGRAMT32HL007516 · NHLBI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI ROBINSON, STEPHEN H · 1985 to 1995
–
NHLBI NIH HHS HL 07516
6 · The paper itself

Abstract

Analysis of immunoglobulin gene rearrangements by Southern blotting is a sensitive and specific method for detecting B cell malignancies but requires a relatively large amount of intact DNA. It cannot be utilized in many cases where only a small amount of tissue is available or where the tissue has been fixed. This report demonstrates that polymerase chain reaction (PCR) amplification in conjunction with single-strand conformational polymorphism (SSCP) analysis can be utilized to detect clonal immunoglobulin heavy chain (IgH) gene rearrangements. IgH gene rearrangements from a series of frozen or formalin-fixed B cell malignancies were PCR-amplified using oligonucleotide primers, based upon consensus sequences in the IgH variable and joining regions. Analysis of the single-stranded PCR products on nondenaturing polyacrylamide gels revealed discrete SSCPs corresponding to the malignant B cells. These SSCPs were detectable when the malignant cells represented as few as 0.2% of the total mononuclear cells in peripheral blood. PCR amplification in conjunction with SSCP analysis thus provides a sensitive and specific method to detect clonal IgH rearrangements from minute amounts of fresh, frozen, or fixed tissue.

Indexed as

Base SequenceBlotting, SouthernCloning, MolecularDNA, NeoplasmDNA, Single-StrandedElectrophoresis, Polyacrylamide GelGene RearrangementHumansImmunoglobulin Heavy ChainsLeukemia, Lymphocytic, Chronic, B-CellLymphoma, B-CellMolecular Sequence DataPolymerase Chain ReactionPolymorphism, GeneticDNA, NeoplasmDNA, Single-StrandedImmunoglobulin Heavy Chains

Identifiers

PMID8506952
PMCPMC1886985
OpenAlexW165585736

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.