Evidence map›Paper›PMID 8479909›Full record

ArticleNucleic acids research1993

Different TRE-related elements are distinguished by sets of DNA-binding proteins with overlapping sequence specificity.

S E Smith, A G Papavassiliou, D Bohmann

Open access · greenAbstract read
In one paragraph

Article in Nucleic acids research, 1993. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

S E SmithEuropean Molecular Biology Laboratory, Heidelberg, Germany.
A G Papavassiliou
D Bohmann
European Molecular Biology Laboratory · DEEuropean Molecular Biology Laboratory · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Several promoter elements with sequence similarity to the prototype TPA-responsive element (TRE) were compared by mobility-shift analyses. Activities within whole cell extracts were identified that bind to the TRE-like elements in the collagenase, the somatostatin, and the c-jun promoters. The corresponding factors appeared to differ in their degree of selectivity for these TRE-like sequences. One protein species bound equally well to all TREs. In addition, a subset of specific activities recognised only the somatostatin and the c-jun-derived element and one DNA-protein complex had exclusive specificity for the TRE present in the c-jun promoter. By antibody 'supershift' assays some of the protein components of the specific complexes were identified as CREB- and ATF-related products. Based on these data we postulate that bZip protein dimers differ in their ability to tolerate variations from the canonical TRE sequence. We propose that TRE-like promoter elements are distinguished by this ability to bind to different subsets of a family of related transcription factors.

Indexed as

EndopeptidasesOncogene ProteinsAnimalsBase SequenceCell LineCollagenasesConsensus SequenceCyclic AMP Response Element-Binding ProteinDNA-Binding ProteinsGenes, junMinkMolecular Sequence DataOncogene Proteins, FusionPromoter Regions, GeneticProtein BindingProto-Oncogene ProteinsCollagenasesCyclic AMP Response Element-Binding ProteinDNA-Binding ProteinsEndopeptidasesOncogene ProteinsOncogene Proteins, FusionProto-Oncogene ProteinsTetradecanoylphorbol AcetateUbiquitin ThiolesteraseUSP6 protein, human

Identifiers

PMID8479909
PMCPMC309366
OpenAlexW2136928974

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.