Evidence map›Paper›PMID 8478611›Full record

ArticleThe Journal of experimental medicine1993

Restricted kappa chain expression in early ontogeny: biased utilization of V kappa exons and preferential V kappa-J kappa recombinations.

C A Medina, J M Teale

Open access · bronzeAbstract read
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Article in The Journal of experimental medicine, 1993. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

C A MedinaDepartment of Microbiology, University of Texas Health Science Center, San Antonio 78284-7758.
J M Teale
The University of Texas Health Science Center at San Antonio · US

Funding

REGULATION OF IMMUNOGLOBULIN CLASS EXPRESSIONR01AI020313 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI TEALE, JUDY M · 1985 to 1991
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B CELL IMMUNE REPERTOIRE IN AUTOIMMUNE MICER01AI027994 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI TEALE, JUDY M · 1989 to 1991
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NIAID NIH HHS AI-20313NIAID NIH HHS AI-27994NIAID NIH HHS AI-9896
6 · The paper itself

Abstract

To determine the extent of kappa chain diversity in the preimmune repertoire early in development, kappa cDNA libraries were analyzed from 15-d old fetal omentum, 18-d-old fetal liver, and 3-wk old bone marrow. An anchored polymerase chain reaction approach was used to avoid bias for particular V kappa families. From the sequence analysis of 27 bone marrow clones, 10 different families and 20 unique V kappa genes were identified. In contrast, the V kappa expression in the fetus is highly restricted and clearly differs from the broader distribution see in 3-wk-old bone marrow. Although several V kappa families were represented in the fetal library including V kappa 9, V kappa 10, V kappa 4,5, V kappa 8, and V kappa 1, one or two members of individual families were observed repeatedly. The fetal liver and omentum libraries were found to be largely overlapping. Given the V kappa families/exons identified in the fetal sequences, the mechanism of kappa rearrangements in the early repertoire appears to occur predominantly by inversion. Importantly, the fetal repertoire was further restricted by dominant V kappa-J kappa combinations such as V kappa 4,5-J kappa 5, V kappa 9-J kappa 4, and V kappa 10-J kappa 1. Since in some cases independent rearrangements could be established, the results indicate a bias for particular V kappa-J kappa joins. The results also suggest that clonal expansion/selection in the fetal repertoire takes place after light chain rearrangement as opposed to at the pre-B cell level in the bone marrow. The restriction observed in kappa light chain expression together with known restrictions in gene usage and junctional diversity at the heavy chain level indicate a remarkably conserved fetal repertoire.

Indexed as

ExonsGene Rearrangement, B-Lymphocyte, Light ChainAmino Acid SequenceAnimalsAntibody DiversityBase SequenceBone MarrowDNAGene ExpressionImmunoglobulin Joining RegionImmunoglobulin kappa-ChainsImmunoglobulin Variable RegionLiverMiceMice, Inbred BALB CMolecular Sequence DataDNAImmunoglobulin Joining RegionImmunoglobulin kappa-ChainsImmunoglobulin Variable Region

Identifiers

PMID8478611
PMCPMC2190999
OpenAlexW2024112963

What OpenQuestion holds

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LicenceCC BY-NC-SA
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.