Evidence map›Paper›PMID 8474435›Full record

ArticleMolecular and cellular biology1993

In vitro definition of the yeast RNA polymerase I enhancer.

M C Schultz, S Y Choe, R H Reeder

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 1993. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

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  7. Distal enhancer regulation by promoter derepression in topologically constrained DNA in vitro.Proceedings of the National Academy of Sciences of the United States of America · 1997
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

M C SchultzHutchinson Cancer Research Center, Seattle, Washington 98104.
S Y Choe
R H Reeder
Cape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZA

Funding

CONTROL OF RIBOSOMAL GENE TRANSCRIPTIONR01GM026624 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI REEDER, RONALD H · 1985 to 2001
$874k
NIGMS NIH HHS GM26624
6 · The paper itself

Abstract

In vitro conditions are reported under which an EcoRI-HpaI fragment of the Saccharomyces cerevisiae ribosomal gene spacer will enhance transcription from an adjacent RNA polymerase I promoter. Enhancement is largely independent of orientation and distance and is proportional to copy number. Mapping experiments reveal that two separate regions of the EcoRI-HpaI fragment are independently capable of promoter stimulation. These regions appear to correspond to elements which have been shown by previous workers to cause enhancement in vivo. Using the detergent Sarkosyl to limit the number of rounds of transcription from each promoter, we found that the degree of enhancement is similar whether one or many rounds of transcription occur. This finding supports a model in which the enhancer increases the number of stable promoter complexes but does not alter the loading of polymerase on an active promoter. Once the stable promoter complex is formed, the enhancer can be physically severed from the promoter with no loss of enhancement. Likewise, the upstream activation region of the promoter can be severed from the core promoter domain once the stable complex has been formed. These results are interpreted to mean that the enhancer functions only to assist stable complex formation and, once that is accomplished, the enhancer is dispensable.

Indexed as

Enhancer Elements, GeneticBase SequenceChromosomes, FungalDeoxyribonuclease EcoRIDeoxyribonucleases, Type II Site-SpecificDNA, RibosomalIntronsKineticsMolecular Sequence DataPromoter Regions, GeneticRestriction MappingRNA Polymerase ISaccharomyces cerevisiaeTerminator Regions, GeneticTranscription, GeneticDeoxyribonuclease EcoRIDeoxyribonucleases, Type II Site-SpecificDNA, Ribosomalendodeoxyribonuclease HpaIRNA Polymerase I

Identifiers

PMID8474435
PMCPMC359632
OpenAlexW2118892785

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.