Evidence map›Paper›PMID 8449877›Full record

ArticleJournal of bacteriology1993

The patB gene product, required for growth of the cyanobacterium Anabaena sp. strain PCC 7120 under nitrogen-limiting conditions, contains ferredoxin and helix-turn-helix domains.

J Liang, L Scappino, R Haselkorn

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In one paragraph

Article in Journal of bacteriology, 1993. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 74 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

J LiangDepartment of Molecular Genetics and Cell Biology, University of Chicago, Illinois 60637.
L Scappino
R Haselkorn
University of Chicago · US

Funding

DIFFERENTIATION IN NITROGEN-FIXING BLUE-GREEN ALGAER01GM021823 · NIGMS · UNIVERSITY OF CHICAGO · PI HASELKORN, ROBERT · 1985 to 2000
$239k
GENE REARRANGEMENT IN CYANOBACTERIAL HETEROCYSTR01GM040685 · NIGMS · UNIVERSITY OF CHICAGO · PI HASELKORN, ROBERT · 1988 to 1995
–
NIGMS NIH HHS GM 21823NIGMS NIH HHS GM 40685
6 · The paper itself

Abstract

A mutant of Anabaena sp. strain PCC 7120, called PAT-2, that grows poorly under nitrogen-fixing conditions, has been isolated. The heterocysts of the mutant strain develop much more slowly than those of the wild type and are spaced more closely in an older culture of the mutant than in the wild type. The wild-type gene that complements the mutation in PAT-2, called patB, was isolated and characterized. The predicted 529-amino-acid PatB protein contains a region very similar to the Fe4S4 bacterial-type ferredoxins near its N terminus and a helix-turn-helix motif near its C terminus. This pattern of domains resembles those of transcriptional regulators in both prokaryotes and eukaryotes. The mutation in strain PAT-2 is the deletion of G at nucleotide 1342 in the patB gene, resulting in the loss of a 62-amino-acid fragment from the C terminus of the PatB protein, including the helix-turn-helix motif.

Indexed as

Nucleic Acid ConformationTransaminasesAmino Acid SequenceAnabaenaBacterial ProteinsBase SequenceBlotting, NorthernBlotting, SouthernDNA, BacterialDNA-Binding ProteinsFerredoxinsFrameshift MutationGenetic Complementation TestMolecular Sequence DataNitrogenRestriction MappingBacterial ProteinsDNA, BacterialDNA-Binding ProteinsFerredoxinsNitrogenPatB protein, Nostoc sp. PCC 7120Transaminases

Identifiers

PMID8449877
PMCPMC203964
OpenAlexW1543179225

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.