Evidence map›Paper›PMID 8447324›Full record

ArticleAmerican journal of human genetics1993

Libraries for each human chromosome, constructed from sorter-enriched chromosomes by using linker-adaptor PCR.

M Vooijs, L C Yu, D Tkachuk, D Pinkel, D Johnson, J W Gray

Abstract read
In one paragraph

Article in American journal of human genetics, 1993. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Bioinformatics tools allow targeted selection of chromosome enumeration probes and aneuploidy detection.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2013
    Article
  2. Chromosomes in the flow to simplify genome analysis.Functional & integrative genomics · 2012
    Review
  3. Article
  4. Genetic analysis using genomic representations.Proceedings of the National Academy of Sciences of the United States of America · 1998
    Article
  5. Article
  6. Comparative analysis of the cattle and human genomes: detection of ZOO-FISH and gene mapping-based chromosomal homologies.Mammalian genome : official journal of the International Mammalian Genome Society · 1996
    Article
  7. Zoo-FISH delineates conserved chromosomal segments in horse and man.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 1996
    Article
  8. Generation of chromosome fragment specific bovine DNA sequences by microdissection and DOP-PCR.Mammalian genome : official journal of the International Mammalian Genome Society · 1996
    Article
  9. A comparative map of the porcine and human genomes demonstrates ZOO-FISH and gene mapping-based chromosomal homologies.Mammalian genome : official journal of the International Mammalian Genome Society · 1996
    Article
  10. Homologous and heterologous FISH painting with PARM-PCR chromosome-specific probes in mammals.Mammalian genome : official journal of the International Mammalian Genome Society · 1996
    Article
  11. Article
  12. Article
  13. Pure chromosome-specific PCR libraries from single sorted chromosomes.Proceedings of the National Academy of Sciences of the United States of America · 1994
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

M VooijsDepartment of Laboratory Medicine, University of California, San Francisco 94143-0808.
L C Yu
D Tkachuk
D Pinkel
D Johnson
J W Gray

Funding

MOLECULAR CYTOGENETICS IN PRE AND NEONATAL DIAGNOSISR01HD017665 · NICHD · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI PINKEL, DANIEL · 1985 to 1999
–
NICHD NIH HHS HD 00081NICHD NIH HHS HD 17665
6 · The paper itself

Abstract

We describe here the production of complex libraries enriched in sequences from each human chromosome type, starting with only a few thousand sorter-purified chromosomes. In this procedure, DNA is extracted from the sorted chromosomes, digested to completion by using the frequently cutting restriction endonuclease Sau3A1, and ligated, on each end, to an adaptor oligonucleotide. These fragments are then amplified using PCR with a sequence homologous to the adaptor oligonucleotide as a primer. We have used this procedure to produce PCR libraries for each of the 24 human chromosomes. These libraries were characterized by gel electrophoresis and found to be composed of a continuum of sequences ranging in size from a few hundred to approximately 1,000 bp. The libraries, when used as probes for fluorescence in situ hybridization, stained the target chromosomes more or less continuously, even after PCR amplification for more than 200 cycles. These libraries are useful as hybridization probes to facilitate molecular cytogenetic studies and as sources of probes either for identification of polymorphic short tandemly repeated sequences or for development of sequence-tagged sites.

Indexed as

Chromosomes, HumanGene LibraryGenetic LinkageBase SequenceCell LineDNADNA ProbesHumansKaryotypingMolecular Sequence DataOligodeoxyribonucleotidesPolymerase Chain ReactionRestriction MappingDNADNA ProbesOligodeoxyribonucleotides

Identifiers

PMID8447324
PMCPMC1682175

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.