Evidence map›Paper›PMID 8428581›Full record

ArticleThe EMBO journal1993

Intermediates in extrachromosomal homologous recombination in Xenopus laevis oocytes: characterization by electron microscopy.

G Pont-Kingdon, R J Dawson, D Carroll

Open access · greenAbstract read
In one paragraph

Article in The EMBO journal, 1993. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Establishment of a Transformation CoupledFrontiers in oncology · 2020
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  9. Endonuclease-induced, targeted homologous extrachromosomal recombination in Xenopus oocytes.Proceedings of the National Academy of Sciences of the United States of America · 1995
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

G Pont-KingdonDepartment of Biochemistry, University of Utah School of Medicine, Salt Lake City 84132.
R J Dawson
D Carroll
University of Utah · US

Funding

MULTIDISCPLINARY BASIC CANCER RESEARCH TRAININGT32CA009602 · NCI · UNIVERSITY OF UTAH · PI LEMONS, RICHARD S · 1988 to 1998
–
NCI NIH HHS 5T32 CA09602
6 · The paper itself

Abstract

Several molecular mechanisms have been proposed to account for nonconservative homologous recombination. This type of recombination is particularly efficient in Xenopus oocytes when appropriate DNA substrates are injected. To distinguish between possible models, we have investigated recombination intermediates from oocytes by direct observation in the electron microscope. Partially recombined DNA was crosslinked with a psoralen derivative after incubation in oocytes to limit the branch migration that might occur during recovery procedures and alter the structures that were initially present. Branched structures, which we interpret as intermediates, represented approximately 10% of the DNA recovered and were readily analyzed. We did not observe any structures with internal loops predicted by invasion mechanisms. The majority of intermediates had one or two single-stranded branches on product-sized molecules, as predicted for incomplete junctions in the resection-annealing mechanism. Detailed length measurements confirmed the expectations of that model. When recovered DNA was not crosslinked, or when annealed junctions were prepared in vitro, we saw branched structures that indicated the occurrence of extensive branch migration. Comparison with the crosslinked sample confirmed the effectiveness of the crosslinking in preserving structures created in the oocytes. Our results strongly support a resection-annealing mechanism of recombination in oocytes.

Indexed as

Recombination, GeneticAnimalsCross-Linking ReagentsDNADNA, Single-StrandedMicroscopy, ElectronModels, GeneticOocytesPlasmidsRec A RecombinasesRestriction MappingTrioxsalenXenopus laevisCross-Linking ReagentsDNADNA, Single-StrandedRec A RecombinasesTrioxsalen

Identifiers

PMID8428581
PMCPMC413172
OpenAlexW2198926605

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.