Evidence map›Paper›PMID 8393987›Full record

ArticleNucleic acids research1993

An Alu element retroposition in two families with Huntington disease defines a new active Alu subfamily.

G B Hutchinson, S E Andrew, H McDonald, Y P Goldberg, R Graham, J M Rommens, M R Hayden

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In one paragraph

Article in Nucleic acids research, 1993. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.7field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 48 citations in OpenAlex.

  1. Review
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  8. Standardized nomenclature for Alu repeats.Journal of molecular evolution · 1996
    Article
  9. The age of Alu subfamilies.Journal of molecular evolution · 1996
    Article
  10. Mosaic evolution of rodent B1 elements.Journal of molecular evolution · 1996
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Evolutionary selection against change in many Alu repeat sequences interspersed through primate genomes.Proceedings of the National Academy of Sciences of the United States of America · 1994
    Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

G B HutchinsonDepartment of Medical Genetics, University of British Columbia, Vancouver.
S E Andrew
H McDonald
Y P Goldberg
R Graham
J M Rommens
M R Hayden
Hospital for Sick Children · CAUniversity of British Columbia · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alu repetitive elements represent the most common short interspersed elements (SINEs) found in primates, with an estimated 500,000 members in the haploid human genome. Considerable evidence has accumulated that these elements have dispersed in the genome by active transcription followed by retroposition, and that this process is ongoing. Sequence variation between the individual elements has lead to the hierarchical classification of Alu repeats into families and subfamilies. Young subfamilies that are still being actively transposed are of considerable interest, and the identification of one such subfamily (designated 'PV') has lead to the hypothesis that the most recent retroposition events are due to a single master Alu source gene. In the course of our search for the gene causing Huntington disease, we have detected an Alu retroposition event in two families. Sequence analysis demonstrates that this Alu element is not a member of the PV subfamily, but is similar to 5 other Alu elements in the GenBank database. Together, these Alu elements, all of which contain a 7 base-pair internal duplication, define a distinct subfamily, designated as the Sb2 subfamily, providing evidence for a second actively retroposing Alu source gene. These data provide support for multiple source genes for Alu retroposition in the human genome.

Indexed as

Repetitive Sequences, Nucleic AcidBase SequenceChromosomes, Human, Pair 4DNADNA Transposable ElementsGene AmplificationHumansHuntington DiseaseModels, GeneticMolecular Sequence DataMutationSequence Analysis, DNADNADNA Transposable Elements

Identifiers

PMID8393987
PMCPMC331434
OpenAlexW2148678175

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.