Evidence map›Paper›PMID 8386280›Full record

ArticleJournal of virology1993

Mutation of the C/EBP binding sites in the Rous sarcoma virus long terminal repeat and gag enhancers.

T A Ryden, M de Mars, K Beemon

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 1993. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
7.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 39 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

T A RydenDepartment of Biology, Johns Hopkins University, Baltimore, Maryland 21218.
M de Mars
K Beemon
Johns Hopkins University · US

Funding

RETROVIRAL REGULATORY SEQUENCES WITHIN CODING SEQUENCESR01CA048746 · NCI · JOHNS HOPKINS UNIVERSITY · PI BEEMON, KAREN L. · 1989 to 2014
$4.6M
NCI NIH HHS CA48746OHS HRSA HHS ST32GM07231
6 · The paper itself

Abstract

Several C/EBP binding sites within the Rous sarcoma virus (RSV) long terminal repeat (LTR) and gag enhancers were mutated, and the effect of these mutations on viral gene expression was assessed. Minimal site-specific mutations in each of three adjacent C/EBP binding sites in the LTR reduced steady-state viral RNA levels. Double mutation of the two 5' proximal LTR binding sites resulted in production of 30% of wild-type levels of virus. DNase I footprinting analysis of mutant DNAs indicated that the mutations blocked C/EBP binding at the affected sites. Additional C/EBP binding sites were identified upstream of the 3' LTR and within the 5' end of the LTRs. Point mutations in the RSV gag intragenic enhancer region, which blocked binding of C/EBP at two of three adjacent C/EBP sites, also reduced virus production significantly. Nuclear extracts prepared from both chicken embryo fibroblasts (CEFs) and chicken muscle contained proteins binding to the same RSV DNA sites as did C/EBP, and mutations that prevented C/EBP binding also blocked binding of these chicken proteins. It appears that CEFs and chicken muscle contain distinct proteins binding to these RSV DNA sites; the CEF binding protein was heat stable, as is C/EBP, while the chicken muscle protein was heat sensitive.

Indexed as

AnimalsAvian Sarcoma VirusesBase SequenceCCAAT-Enhancer-Binding ProteinsChick EmbryoChickensChromosome MappingConsensus SequenceDNA-Binding ProteinsEnhancer Elements, GeneticFibroblastsGenes, gagHot TemperatureMolecular Sequence DataMusclesMutagenesis, Site-DirectedCCAAT-Enhancer-Binding ProteinsDNA-Binding ProteinsNuclear ProteinsRNA, ViralViral Proteins

Identifiers

PMID8386280
PMCPMC237611
OpenAlexW1910737557

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.