Evidence map›Paper›PMID 8355699›Full record

ArticleMolecular and cellular biology1993

Demethylation of somatic and testis-specific histone H2A and H2B genes in F9 embryonal carcinoma cells.

Y C Choi, C B Chae

Abstract read
In one paragraph

Article in Molecular and cellular biology, 1993. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
  2. Article
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  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Identification of a meiosis-specific protein as a member of the class of cancer/testis antigens.Proceedings of the National Academy of Sciences of the United States of America · 1998
    Article
  10. Review
  11. Article
  12. Article
  13. A B2-L1 composite between rat histone H2A and H3 genes.Mammalian genome : official journal of the International Mammalian Genome Society · 1994
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Y C ChoiDepartment of Biochemistry and Biophysics, University of North Carolina, Chapel Hill 27599-7260.
C B Chae
University of North Carolina at Chapel Hill · US

Funding

TESTIS-SPECIFIC HISTONES AND MRNA DURING SPERMATOGENESISR01HD020136 · NICHD · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI CHAE, CHI-BOM · 1985 to 1993
–
NICHD NIH HHS HD-20136
6 · The paper itself

Abstract

In contrast to many other genes containing a CpG island, the testis-specific H2B (TH2B) histone gene exhibits tissue-specific methylation patterns in correlation with gene activity. Characterization of the methylation patterns within a 20-kb segment containing the TH2A and TH2B genes in comparison with that in a somatic histone cluster revealed that: (i) the germ cell-specific unmethylated domain of the TH2A and TH2B genes is defined as a small region surrounding the CpG islands of the TH2A and TH2B genes and (ii) somatic histone genes are unmethylated in both liver and germ cells, like other genes containing CpG islands, whereas flanking sequences are methylated. Transfection of in vitro-methylated TH2B, somatic H2B, and mouse metallothionein I constructs into F9 embryonal carcinoma cells revealed that the CpG islands of the TH2A and TH2B genes were demethylated like those of the somatic H2A and H2B genes and the metallothionein I gene. The demethylation of those CpG islands became significantly inefficient at a high number of integrated copies and a high density of methylated CpG dinucleotides. In contrast, three sites in the somatic histone cluster, of which two sites are located in the long terminal repeat of an endogenous retrovirus-like sequence, were efficiently demethylated even at a high copy number and a high density of methylated CpG dinucleotides. These results suggest two possible mechanisms for demethylation in F9 cells and methylation of CpG islands of the TH2A and TH2B genes at the postblastula stage during embryogenesis.

Indexed as

AnimalsBase SequenceGenesHistonesIn Vitro TechniquesMaleMethylationMiceMolecular Sequence DataRepetitive Sequences, Nucleic AcidRestriction MappingTeratomaTestisTransfectionTumor Cells, CulturedHistones

Identifiers

PMID8355699
PMCPMC360272
OpenAlexW2099039454

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.