Evidence map›Paper›PMID 8332470›Full record

ArticleNucleic acids research1993

Activation of a dual adenovirus promoter containing nonconsensus TATA motifs in Schizosaccharomyces pombe: role of TATA sequences in the efficiency of transcription.

S Swaminathan, P Malhotra, C F Manohar, R Dhar, B Thimmapaya

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Nucleic acids research, 1993. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

S SwaminathanRobert H. Lurie Cancer Center, Northwestern University Medical School, Chicago, IL 60611.
P Malhotra
C F Manohar
R Dhar
B Thimmapaya
Northwestern University · USBipar · FRNational Institutes of Health · US

Funding

STRUCTURE AND FUNCTION OF ADENOVIRUS GENOMER01AI018029 · NIAID · NORTHWESTERN UNIVERSITY · PI THIMMAPAYA, BAYAR · 1985 to 1994
–
ORGANIZATION AND EXPRESSION OF DNA TUMOR VIRUS GENOMESR01AI020156 · NIAID · NORTHWESTERN UNIVERSITY · PI THIMMAPAYA, BAYAR · 1985 to 1997
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NIAID NIH HHS AI18029NIAID NIH HHS AI 20156
6 · The paper itself

Abstract

The role of TATA elements in the expression of a mammalian promoter was investigated in the fission yeast Schizosaccharomyces pombe, by studying the human adenovirus E2-early promoter. This is a unique dual promoter with two nonconsensus TATA elements directing transcription from two cap sites, +1 and -26. A sequence TTAAGA provides the TATA box function for the +1 promoter, whereas a sequence TAAATT, with a closer resemblance to the consensus (TATAA/TA) provides this function for the -26 promoter. Yet, in human cells, the +1 promoter is transcribed about 20 fold more efficiently than the -26 promoter. We found that both promoters are transcribed faithfully in S. pombe with start sites identical or close to those found in human cells. Surprisingly, the relative ratio of expression for the +1 and -26 promoters was exactly reversed in S. pombe cells. This reversal appeared to be due to the relatively weak binding of S. pombe TATA binding protein to the TTAAGA motif, rather than to its rate of dissociation. Furthermore, we show that in S. pombe, promoter expression correlates well with the nucleotide sequence of the TATA element rather than the context in which it is placed. By contrast, it is the context of the TATA element, rather than its nucleotide sequence that appears to be critical for promoter expression in human cells. Our data suggest the existence of one or more additional factors in human cells that permit the utilization of nonconsensus TATA elements. S. pombe appears to lack these factors.

Indexed as

Gene Expression Regulation, FungalGene Expression Regulation, ViralPromoter Regions, GeneticTATA BoxTranscription, GeneticAdenoviruses, HumanBase SequenceCells, CulturedChloramphenicol O-AcetyltransferaseCloning, MolecularGenetic VectorsHumansKineticsMolecular Sequence DataSchizosaccharomycesChloramphenicol O-Acetyltransferase

Identifiers

PMID8332470
PMCPMC309611
OpenAlexW1983003985

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.