Evidence map›Paper›PMID 8255781›Full record

ArticleNucleic acids research1993

Functional redundancy of octamer elements in the mouse mammary tumor virus promoter.

M Huang, J W Lee, D O Peterson

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 1993. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

M HuangDepartment of Biochemistry and Biophysics, Texas A&M University College Station 77843-2128.
J W Lee
D O Peterson
Texas A&M University · US

Funding

GENETIC AND MOLECULAR ANALYSIS OF STEROID RESPONSIVENESSR01CA032695 · NCI · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI PETERSON, DAVID O · 1986 to 1995
–
MECHANISMS OF STEROID HORMONE-REGULATED TRANSCRIPTIONR01CA048041 · NCI · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI PETERSON, DAVID O · 1988 to 1992
–
NCI NIH HHS CA32695NCI NIH HHS CA48041
6 · The paper itself

Abstract

The promoter of mouse mammary tumor virus contains three overlapping sequence elements related to the octamer consensus (ATGCAAAT) that are largely contained within two 10 bp direct repeats (CTTATGTAAA) separated by a 2 bp spacer between 60 and 39 relative to the start of transcription. Gel electrophoresis mobility shift competition assays demonstrate that the most distal of these octamer-related elements is recognized by a protein that also binds to the most proximal element, while the central octamer-related element is not efficiently recognized. Transient transfection assays with altered promoters reveal that the portion of the 10 bp repeat that is not related to the octamer consensus appears not to be important for transcription. The distal and proximal octamer-related elements are, at least to some extent, functionally redundant. Complete deletion of one element has little or no effect on promoter activity so long as certain spacing constraints among remaining promoter elements are maintained. Systematic variation of such spacing reveals a cyclic effect on promoter activity corresponding to the periodicity of Bform DNA, suggesting functional interactions between proteins bound to adjacent sites.

Indexed as

Promoter Regions, GeneticAnimalsBase SequenceCell LineCloning, MolecularConsensus SequenceDNA, ViralMammary Tumor Virus, MouseMiceMolecular Sequence DataRepetitive Sequences, Nucleic AcidTranscription, GeneticTransfectionDNA, Viral

Identifiers

PMID8255781
PMCPMC310642
OpenAlexW2018258654

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.