Evidence map›Paper›PMID 8152905›Full record

ArticleNucleic acids research1994

Multiple elements in human beta-globin locus control region 5' HS 2 are involved in enhancer activity and position-independent, transgene expression.

J J Caterina, D J Ciavatta, D Donze, R R Behringer, T M Townes

Open access · greenAbstract read
In one paragraph

Article in Nucleic acids research, 1994. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
4.7field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 86 citations in OpenAlex.

  1. Article
  2. Transcriptional mechanisms underlying hemoglobin synthesis.Cold Spring Harbor perspectives in medicine · 2013
    Review
  3. Article
  4. Article
  5. Advances in genome studies: The PAG 2010 conference.Functional & integrative genomics · 2010
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Targeting a SWI/SNF-related chromatin remodeling complex to the beta-globin promoter in erythroid cells.Proceedings of the National Academy of Sciences of the United States of America · 1999
    Article
  13. Article
  14. Acetylation and modulation of erythroid Krüppel-like factor (EKLF) activity by interaction with histone acetyltransferases.Proceedings of the National Academy of Sciences of the United States of America · 1998
    Article
  15. Mitogen-activated protein kinases enhance long-range activation by the beta-globin locus control region.Proceedings of the National Academy of Sciences of the United States of America · 1998
    Article
  16. Article
  17. Article
  18. Reactivation of silenced, virally transduced genes by inhibitors of histone deacetylase.Proceedings of the National Academy of Sciences of the United States of America · 1997
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

J J CaterinaDepartment of Biochemistry and Molecular Genetics, School of Medicine, University of Alabama at Birmingham 35294.
D J Ciavatta
D Donze
R R Behringer
T M Townes
University of Alabama at Birmingham · US

Funding

HUMAN GLOBIN GENE EXPRESSION DURING DEVELOPMENTR01HL035559 · NHLBI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI TOWNES, TIM M. · 1986 to 2002
$871k
TRAINING PROGRAM IN VIRAL ONCOLOGYT32CA009467 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI HUNTER, ERIC · 1985 to 2002
$691k
NCI NIH HHS 5 T32 CA09467NHLBI NIH HHS HL35559NHLBI NIH HHS HL43508
6 · The paper itself

Abstract

The human beta-globin Locus Control Region (LCR) has two important activities. First, the LCR opens a 200 kb chromosomal domain containing the human epsilon-, gamma- and beta-globin genes and, secondly, these sequences function as a powerful enhancer of epsilon-, gamma- and beta-globin gene expression. Erythroid-specific, DNase I hypersensitive sites (HS) mark sequences that are critical for LCR activity. Previous experiments demonstrated that a 1.9 kb fragment containing the 5' HS 2 site confers position-independent expression in transgenic mice and enhances human beta-globin gene expression 100-fold. Further analysis of this region demonstrates that multiple sequences are required for maximal enhancer activity; deletion of SP1, NF-E2, GATA-1 or USF binding sites significantly decrease beta-globin gene expression. In contrast, no single site is required for position-independent transgene expression; all mice with site-specific mutations in 5' HS 2 express human beta-globin mRNA regardless of the site of transgene integration. Apparently, multiple combinations of protein binding sites in 5' HS 2 are sufficient to prevent chromosomal position effects that inhibit transgene expression.

Indexed as

Enhancer Elements, GeneticGene ExpressionAnimalsBase SequenceBinding SitesDeoxyribonuclease IDNA-Binding ProteinsErythroid-Specific DNA-Binding FactorsGATA1 Transcription FactorGene DeletionGlobinsHumansMiceMice, TransgenicMolecular Sequence DataMutagenesis, Site-DirectedDeoxyribonuclease IDNA-Binding ProteinsErythroid-Specific DNA-Binding FactorsGATA1 protein, humanGata1 protein, mouseGATA1 Transcription FactorGlobinsNFE2 protein, humanNfe2 protein, mouseNF-E2 Transcription FactorNF-E2 Transcription Factor, p45 SubunitSp1 Transcription FactorTranscription FactorsUpstream Stimulatory FactorsUSF1 protein, humanUsf1 protein, mouse

Identifiers

PMID8152905
PMCPMC307922
OpenAlexW2052042646

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.