Evidence map›Paper›PMID 8075541›Full record

ArticleJournal of biomolecular NMR1994

1H, 15N, 13C and 13CO resonance assignments and secondary structure of villin 14T, a domain conserved among actin-severing proteins.

M A Markus, T Nakayama, P Matsudaira, G Wagner

Abstract read
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In one paragraph

Article in Journal of biomolecular NMR, 1994. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Refined structure of villin 14T and a detailed comparison with other actin-severing domains.Protein science : a publication of the Protein Society · 1997
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

M A MarkusCommittee on Higher Degrees in Biophysics, Harvard University, Cambridge, MA 02138.
T Nakayama
P Matsudaira
G Wagner
Harvard University · US

Funding

NMR STUDIES OF PROTEIN-TARGET INTERACTIONSR01GM038608 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI WAGNER, GERHARD · 1988 to 2002
$591k
STRUCTURE AND FUNCTION OF THE INTESTINE BRUSH BORDERR01DK035306 · NIDDK · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI MATSUDAIRA, PAUL T. · 1986 to 1992
–
NIDDK NIH HHS DK 35306NIGMS NIH HHS GM 38608
6 · The paper itself

Abstract

Sequence-specific assignments have been made for the 1H, 15N, 13C and 13CO resonances of 14T, the 126-residue amino-terminal domain of the actin-severing protein villin. Villin is a member of a family of proteins that regulate cytoskeletal actin by severing, capping and nucleating actin filaments. Actin binding is dependent on calcium and disrupted by phosphatidyl inositol 4,5-bisphosphate. Actin-severing proteins are built from three or six repeats of a conserved domain, represented by 14T. Expression in Escherichia coli facilitated incorporation of 15N and 13C isotopes and application of triple-resonance, backbone-directed strategies for the sequential assignments. Elements of regular secondary structure have been identified by characteristic patterns of NOE cross peaks and values of vicinal 3JHNH alpha coupling constants. Amide protons that exchange slowly (rates less than 1.0 x 10(-4) per min) are concentrated in the central beta-sheet and the second and third alpha-helices, suggesting that these elements of secondary structure form very stable hydrogen bonds. Assignments for the amide nitrogens and protons have been examined as a function of pH and calcium concentration. Based on the conservation of chemical shifts in the core of the domain, villin 14T maintains the same overall fold in the pH range from 4.15 to 6.91 and the calcium range from 0 to 50 mM. The calcium data indicate the presence of two calcium-binding sites and suggest their locations.

Indexed as

Magnetic Resonance SpectroscopyProtein Structure, TertiaryActinsAmino Acid SequenceBinding SitesCalciumCalcium-Binding ProteinsCarbon IsotopesCarrier ProteinsDesulfovibrio vulgarisFlavodoxinHydrogenMicrofilament ProteinsModels, MolecularMolecular Sequence DataNitrogen IsotopesActinsCalciumCalcium-Binding ProteinsCarbon IsotopesCarrier ProteinsFlavodoxinHydrogenMicrofilament ProteinsNitrogen Isotopesvillin

Identifiers

PMID8075541
OpenAlexW2048809786

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.