Evidence map›Paper›PMID 8070418›Full record

ArticleThe EMBO journal1994

Requirement for a zinc motif for template recognition by the bacteriophage T7 primase.

L V Mendelman, B B Beauchamp, C C Richardson

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The EMBO journal, 1994. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
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  3. Review
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  7. Article
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  13. Article
  14. Direct role for the RNA polymerase domain of T7 primase in primer delivery.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  15. Mechanism and evolution of DNA primases.Biochimica et biophysica acta · 2010
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

L V MendelmanDepartment of Biological Chemistry and Molecular Pharmacology, Harvard University Medical School, Boston, MA 02115.
B B Beauchamp
C C Richardson
Harvard University · US

Funding

STRUCTURE AND SYNTHESIS OF DNAR01AI006045 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI RICHARDSON, CHARLES C. · 1985 to 1985
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STRUCTURE AND SYNTHESIS OF DNAR37AI006045 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI RICHARDSON, CHARLES C. · 1986 to 1995
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NIAID NIH HHS AI-06045
6 · The paper itself

Abstract

Gene 4 of bacteriophage T7 encodes two proteins, a 63 kDa and a colinear 56 kDa protein. The coding sequence of the 56 kDa protein begins at the residues encoding an internal methionine located 64 amino acids from the N-terminus of the 63 kDa protein. The 56 kDa gene 4 protein is a helicase and the 63 kDa gene 4 protein is a helicase and a primase. The unique 7 kDa N-terminus of the 63 kDa gene 4 protein is essential for primer synthesis and contains sequences with homology to a Cys4 metal binding motif, Cys-X2-Cys-X17-Cys-X2-Cys. The zinc content of the 63 kDa gene 4 protein is 1.1 g-atom/mol protein, while the zinc content of the 56 kDa gene 4 protein is < 0.01, as determined by atomic absorption spectrometry. A bacteriophage deleted for gene 4, T7 delta 4-1, is incapable of growing on Escherichia coli strains that contain plasmids expressing gene 4 proteins with single amino acid substitutions of Ser at each of the four conserved Cys residues (efficiency of plating, 10(-7)). Primase containing a substitution of the third Cys for Ser has been overexpressed in E. coli and purified to homogeneity. This mutant primase cannot catalyze template-directed synthesis of oligoribonucleotides although it is able to catalyze the synthesis of random diribonucleotides in a template-independent fashion. The mutant primase has reduced helicase activity although it catalyzes single-stranded DNA-dependent hydrolysis of dTTP at rates comparable with wild type primase. The zinc content of the mutant primase is 0.5 g-atom/mol protein.

Indexed as

Amino Acid SequenceBacteriophage T7Base SequenceDNA HelicasesDNA PrimaseDNA, Single-StrandedMetalloproteinsModels, GeneticMolecular Sequence DataOligoribonucleotidesRNA NucleotidyltransferasesSubstrate SpecificityThymine NucleotidesZincDNA HelicasesDNA PrimaseDNA, Single-StrandedMetalloproteinsOligoribonucleotidesRNA Nucleotidyltransferasesthymidine 5'-triphosphateThymine NucleotidesZinc

Identifiers

PMID8070418
PMCPMC395304
OpenAlexW2212035881

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.