ArticleNucleic acids research1994
A master sequence related to a free left Alu monomer (FLAM) at the origin of the B1 family in rodent genomes.
Article in Nucleic acids research, 1994. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.
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Who cites it
33 citing papers in PubMed.
- Article
- Isoform-specific and ubiquitination dependent recruitment of Tet1 to replicating heterochromatin modulates methylcytosine oxidation.Nature communications · 2022Article
- Genome-wide characterization of RNA editing highlights roles of high editing events of glutamatergic synapse during mouse retinal development.Computational and structural biotechnology journal · 2022Article
- Transposon-triggered innate immune response confers cancer resistance to the blind mole rat.Nature immunology · 2021Article
- DeepGRP: engineering a software tool for predicting genomic repetitive elements using Recurrent Neural Networks with attention.Algorithms for molecular biology : AMB · 2021Article
- TFs for TEs: the transcription factor repertoire of mammalian transposable elements.Genes & development · 2021Review
- Hagfish genome reveals parallel evolution of 7SL RNA-derived SINEs.Mobile DNA · 2020Article
- DNA replication and repair kinetics of Alu, LINE-1 and satellite III genomic repetitive elements.Epigenetics & chromatin · 2018Article
- Evidence for convergent evolution of SINE-directed Staufen-mediated mRNA decay.Proceedings of the National Academy of Sciences of the United States of America · 2018Article
- A Role for the Mutagenic DNA Self-Catalyzed Depurination Mechanism in the Evolution of 7SL-Derived RNAs.Journal of molecular evolution · 2017Article
- Novel Role of 3'UTR-Embedded Alu Elements as Facilitators of Processed Pseudogene Genesis and Host Gene Capture by Viral Genomes.PloS one · 2016Article
- The Influence of LINE-1 and SINE Retrotransposons on Mammalian Genomes.Microbiology spectrum · 2015Review
- Tupaia belangeri as an experimental animal model for viral infection.Experimental animals · 2014Review
- Alu mobile elements: from junk DNA to genomic gems.Scientifica · 2012Review
- The evolution and expression of the snaR family of small non-coding RNAs.Nucleic acids research · 2011Article
- Evolution of gene regulation of pluripotency--the case for wiki tracks at genome browsers.Biology direct · 2010Article
- The pivotal roles of TIA proteins in 5' splice-site selection of alu exons and across evolution.PLoS genetics · 2009Article
- Alternative splicing of Alu exons--two arms are better than one.Nucleic acids research · 2008Article
- DNA cleavage and Trp53 differentially affect SINE transcription.Genes, chromosomes & cancer · 2007Article
- Allele-specific demethylation at an imprinted mammalian promoter.Nucleic acids research · 2007Article
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Abstract
The question of the origin of the B1 family of rodents is addressed. The modern B1 elements are similar to the left Alu monomer, but with a 9 bp deletion and a 29 bp duplication. Search of databases for B1 elements that do not exhibit those modern features revealed sequence fragments that are very similar to the free left Alu monomers (FLAMs) described in the primate genomes. In addition, the analysis reveals elements that have 10 bp or 7 bp deletion in place of the 9 bp deletion but without the 29 bp tandem duplication. The elements described define families of proto B1 elements (referred as PB1, PB1D10 and PB1D7) that appeared before the first modern B1 element. A phylogenetic reconstruction suggest that the origin of Alu and B1 families took place before the divergence between the primate and the rodent lineages and that each family has followed different evolutionary routes since this radiation.
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