ArticleProceedings of the National Academy of Sciences of the United States of America1994
Retrotransposons in the flanking regions of normal plant genes: a role for copia-like elements in the evolution of gene structure and expression.
Article in Proceedings of the National Academy of Sciences of the United States of America, 1994. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers.
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Who cites it
97 citing papers in PubMed.
- Distribution and Location of BEVs in Different Genotypes of Bananas Reveal the Coevolution of BSVs and Bananas.International journal of molecular sciences · 2023Article
- Genome-Wide Identification and Expression Analysis of Wall-Associated Kinase (WAK) Gene Family inPlants (Basel, Switzerland) · 2022Article
- Distinct composition and amplification dynamics of transposable elements in sacred lotus (Nelumbo nucifera Gaertn.).The Plant journal : for cell and molecular biology · 2022Article
- The ecology of palm genomes: repeat-associated genome size expansion is constrained by aridity.The New phytologist · 2022Article
- Duplication of NRAMP3 gene in poplars generated two homologous transporters with distinct functions.Molecular biology and evolution · 2022Article
- Characterization of transposable elements within the Bemisia tabaci species complex.Mobile DNA · 2022Article
- The Dynamism of Transposon Methylation for Plant Development and Stress Adaptation.International journal of molecular sciences · 2021Review
- Spontaneous mutations in maize pollen are frequent in some lines and arise mainly from retrotranspositions and deletions.Proceedings of the National Academy of Sciences of the United States of America · 2019Article
- Chimeras Linked to Tandem Repeats and Transposable Elements in Tetraploid Hybrid Fish.Marine biotechnology (New York, N.Y.) · 2017Article
- Epigenetic inheritance, prions and evolution.Journal of genetics · 2017Review
- Review
- Development of IRAP- and REMAP-derived SCAR markers for marker-assisted selection of the stripe rust resistance gene Yr15 derived from wild emmer wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2015Article
- Co-evolution of plant LTR-retrotransposons and their host genomes.Protein & cell · 2013Review
- The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolution.Heredity · 2013Article
- Genomewide variation in an introgression line of rice-Zizania revealed by whole-genome re-sequencing.PloS one · 2013Article
- Identification, characterization and distribution of transposable elements in the flax (Linum usitatissimum L.) genome.BMC genomics · 2012Article
- Isolation of Ty1-copia retrotransposon in myrtle genome and development of S-SAP molecular marker.Molecular biology reports · 2012Article
- Identification of a functional transposon insertion in the maize domestication gene tb1.Nature genetics · 2011Article
- Ttd1a promoter is involved in DNA-protein binding by salt and light stresses.Molecular biology reports · 2011Article
- Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing.BMC plant biology · 2010Article
37 more citing papers are in PubMed but not listed here.
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3 authors.
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No grant is acknowledged in the PubMed record.
Abstract
The wx-K mutation results from the insertion of a copia-like retrotransposon into exon 12 of the maize waxy gene. This retrotransposon, named Hopscotch, has one long open reading frame encoding all of the domains required for transposition. Computer-assisted database searches using Hopscotch and other plant copia-like retroelements as query sequences have revealed that ancient, degenerate retrotransposon insertions are found in close proximity to 21 previously sequenced plant genes. The data suggest that these elements may be involved in gene duplication and the regulation of gene expression. Similar searches using the Drosophila retrotransposon copia did not reveal any retrotransposon-like sequences in the flanking regions of animal genes. These results, together with the recent finding that reverse-transcriptase sequences characteristic of copia-like elements are ubiquitous and diverse in plants, suggest that copia-like retrotransposons are an ancient component of plant genomes.
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