ArticleJournal of molecular evolution1994
An analysis of retroposition in plants based on a family of SINEs from Brassica napus.
Article in Journal of molecular evolution, 1994. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.
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Who cites it
27 citing papers in PubMed, 79 citations in OpenAlex.
- The Dynamism of Transposon Methylation for Plant Development and Stress Adaptation.International journal of molecular sciences · 2021Review
- Cross-Kingdom Commonality of a Novel Insertion Signature of RTE-Related Short Retroposons.Genome biology and evolution · 2018Article
- Genome-wide analysis of a recently active retrotransposon, Au SINE, in wheat: content, distribution within subgenomes and chromosomes, and gene associations.Plant cell reports · 2018Article
- Distribution, Diversity, and Long-Term Retention of Grass Short Interspersed Nuclear Elements (SINEs).Genome biology and evolution · 2017Article
- Identification and characterisation of Short Interspersed Nuclear Elements in the olive tree (Olea europaea L.) genome.Molecular genetics and genomics : MGG · 2017Article
- Genome-wide analysis of short interspersed nuclear elements SINES revealed high sequence conservation, gene association and retrotranspositional activity in wheat.The Plant journal : for cell and molecular biology · 2013Article
- RNA-Mediated Gene Duplication and Retroposons: Retrogenes, LINEs, SINEs, and Sequence Specificity.International journal of evolutionary biology · 2013Article
- SINEBase: a database and tool for SINE analysis.Nucleic acids research · 2013Article
- Identification and characterization of a new member of the SINE Au retroposon family (GmAu1) in the soybean, Glycine max (L.) Merr., genome and its potential application.Plant cell reports · 2011Article
- Targeted identification of short interspersed nuclear element families shows their widespread existence and extreme heterogeneity in plant genomes.The Plant cell · 2011Article
- Development of crop-specific transposable element (SINE) markers for studying gene flow from oilseed rape to wild radish.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2005Article
- BoS: a large and diverse family of short interspersed elements (SINEs) in Brassica oleracea.Journal of molecular evolution · 2005Article
- The diversity of retroelements in diploid and allotetraploid Brassica species.Plant molecular biology · 2004Article
- V-SINEs: a new superfamily of vertebrate SINEs that are widespread in vertebrate genomes and retain a strongly conserved segment within each repetitive unit.Genome research · 2002Article
- Phylogenetic and familial estimates of mitochondrial substitution rates: study of control region mutations in deep-rooting pedigrees.American journal of human genetics · 2001Article
- Target sites for SINE integration in Brassica genomes display nuclear matrix binding activity.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2001Article
- SINE retroposons can be used in vivo as nucleation centers for de novo methylation.Molecular and cellular biology · 2000Article
- A DNA target of 30 bp is sufficient for RNA-directed DNA methylation.RNA (New York, N.Y.) · 2000Article
- CORE-SINEs: eukaryotic short interspersed retroposing elements with common sequence motifs.Proceedings of the National Academy of Sciences of the United States of America · 1999Article
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Corrections and comments
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Authors and funding
6 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The identification of a family of SINE retroposons dispersed in the genome of oilseed rape Brassica napus has provided the basis for an evolutionary analysis of retroposition in plants. The repetitive elements (called S1Bn) are 170 bp long and occupy roughly 500 loci by haploid genome. They present characteristic features of SINE retroposons such as a 3' terminal A-rich region, two conserved polymerase III motifs (box A and B), flanking direct repeats of variable sizes, and a primary and secondary sequence homology to several tRNA species. A consensus sequence was made from the alignment of 34 members of the family. The retroposon population was divided into five subfamilies based on several correlated sets of mutations from the consensus. These precise separations in subfamilies based on "diagnostic" mutations and the random distribution of mutations observed inside each subfamily are consistent with the master sequence model proposed for the dispersion of mammalian retroposons. An independent analysis of each subfamily provides strong evidence for the coexpression of at least three subfamily master sequences (SMS). In contrast to mammalian retroposition, diagnostic positions are not shared between SMS. We therefore propose that SMS were all derived from a general master sequence (GMS) and independently activated for retroposition after a variable period of random drift. Possible models for plant retroposition are discussed.
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