Evidence map›Paper›PMID 7957043›Full record

ArticleThe EMBO journal1994

Auxin inducibility and developmental expression of axi 1: a gene directing auxin independent growth in tobacco protoplasts.

R Walden, H Hayashi, H Lubenow, I Czaja, J Schell

RetractedAbstract readRetracted Publication
In one paragraph

Article in The EMBO journal, 1994. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Convergent pathways for lipochitooligosaccharide and auxin signaling in tobacco cells.Proceedings of the National Academy of Sciences of the United States of America · 1996
    Article
  5. Article
4 · The record

Corrections and comments

  • Retraction · 1999-05-17Investigation by Third Party · Results Not Reproducible · · See also: https://onlinelibrary.wiley.com/doi/full/10.1046/j.1365-313X.1999.00404.x
  • Retracted
5 · Who and what money

Authors and funding

5 authors.

R WaldenMax Planck Institut für Züchtungsforschung, Köln, Germany.
H Hayashi
H Lubenow
I Czaja
J Schell

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We describe the characterization of axi 1, a tobacco gene isolated by activation T-DNA tagging which apparently plays a role in auxin action. Upon deregulated expression, axi 1 confers on protoplasts the ability to grow in culture not only in the absence of auxin but also in high auxin concentrations where maximal frequencies of cell division are not observed in wild-type protoplasts. In wild-type plants axi 1 is transcribed principally in root tissue. In the tagged plant line, axi 159, axi 1 RNA can be detected in all tissues tested. Freshly isolated wild-type protoplasts require auxin for the accumulation of detectable levels of axi 1 transcript and this precedes maximal levels of cell division. In contrast, axi 1 RNA appears in protoplasts isolated from axi 159 plants in the absence of auxin. axi 1 was localized to 6.2 kb of plant genomic DNA flanking the right T-DNA border sequence. axi 1 is interrupted by nine introns and in tobacco it is a member of a small gene family. Database searching reveals no similarity within the coding region with other genes. Sequences within the fourth intron are similar to those located in the non-coding regions of other plant genes, some of which are known to be auxin inducible. A DNA fragment containing the conserved sequence acts as an auxin responsive element in transient expression assays in wild-type protoplasts and this response is higher in axi 159 protoplasts. This suggests that auxin induced axi 1 expression may be mediated by a region contained within an intron sequence and that the axi 1 product might play a role in this induction.

Indexed as

Gene Expression Regulation, DevelopmentalGene Expression Regulation, PlantPlants, ToxicBase SequenceCell DivisionConserved SequenceIndoleacetic AcidsIntronsMolecular Sequence DataMultigene FamilyNicotianaProtoplastsRNA, MessengerRNA, PlantSequence Homology, Nucleic AcidIndoleacetic AcidsRNA, MessengerRNA, Plant

Identifiers

PMID7957043
PMCPMC395411

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.