ArticleProceedings of the National Academy of Sciences of the United States of America1994
Species-specific amplification of tRNA-derived short interspersed repetitive elements (SINEs) by retroposition: a process of parasitization of entire genomes during the evolution of salmonids.
Article in Proceedings of the National Academy of Sciences of the United States of America, 1994. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed, 57 citations in OpenAlex.
- Review
- Identification and characterization of a new member of the SINE Au retroposon family (GmAu1) in the soybean, Glycine max (L.) Merr., genome and its potential application.Plant cell reports · 2011Article
- Insertional variability of four transposable elements and population structure of the midge Chironomus riparius (Diptera).Molecular genetics and genomics : MGG · 2011Article
- MH class IIalpha polymorphism in local and global adaptation of Arctic charr (Salvelinus alpinus L.).Immunogenetics · 2008Article
- The Evolution of SINEs and LINEs in the genus Chironomus (Diptera).Journal of molecular evolution · 2004Article
- V-SINEs: a new superfamily of vertebrate SINEs that are widespread in vertebrate genomes and retain a strongly conserved segment within each repetitive unit.Genome research · 2002Article
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- Use of a deviant mitochondrial genetic code in yellow-green algae as a landmark for segregating members within the phylum.Journal of molecular evolution · 1997Article
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- Characterization of species-specifically amplified SINEs in three salmonid species--chum salmon, pink salmon, and kokanee: the local environment of the genome may be important for the generation of a dominant source gene at a newly retroposed locus.Journal of molecular evolution · 1996Article
- Sequence analysis of a polymorphic Mhc class II gene in Pacific salmon.Immunogenetics · 1996Article
- Evolution of the active sequences of the HpaI short interspersed elements.Journal of molecular evolution · 1995Article
- Article
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Authors and funding
6 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Fourteen members of the Hpa I subfamilies of tRNA-derived SINEs in particular salmonid species were isolated from genomic libraries of chum salmon, kokanee, coho salmon, masu salmon, and steelhead. Alignment of the sequences of these 14 members, together with those of 4 members already published, 3 of which were previously demonstrated to have been amplified specifically in certain lineages, revealed the presence of five subfamilies with particular diagnostic nucleotides. The amplification of members of the same subfamily in different salmonid lineages and the amplification of members of different subfamilies in the same salmonid lineage suggest that multiple dispersed loci were responsible for amplification or, alternatively, that SINEs were transmitted horizontally between species. These two possibilities are not mutually exclusive. Our results also indicate that the Hpa I SINEs in salmonids behave like parasites. The amplification of these SINEs is ongoing and continues to shape the evolution of salmonid genomes.
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