Evidence map›Paper›PMID 7937135›Full record

ArticleNucleic acids research1994

The region encompassing the procyclic acidic repetitive protein (PARP) gene promoter plays a role in plasmid DNA replication in Trypanosoma brucei.

P K Patnaik, X Fang, G A Cross

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 1994. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Critical roles of glycosylphosphatidylinositol for Trypanosoma brucei.Proceedings of the National Academy of Sciences of the United States of America · 2000
    Article
  7. Article
  8. Article
  9. Control of gene expression in trypanosomes.Microbiological reviews · 1995
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

P K PatnaikLaboratory of Molecular Parasitology, Rockefeller University, New York, NY 10021-6399.
X Fang
G A Cross
Rockefeller University · US

Funding

MOLECULAR GENETICS OF TRYPANOSOME ANTIGENIC VARIATIONR01AI021729 · NIAID · ROCKEFELLER UNIVERSITY · PI CROSS, GEORGE ALAN MARTIN · 1985 to 2011
$5.3M
TRYPANOSOME GENE EXPRESSION AND ENVIRONMENTAL ADAPTATIONR01AI022229 · NIAID · ROCKEFELLER UNIVERSITY · PI CROSS, GEORGE ALAN MARTIN · 1985 to 1993
–
MOLECULAR GENETICS OF TRYPANOSOME ANTIGENIC VARIATIONR37AI021729 · NIAID · ROCKEFELLER UNIVERSITY · PI CROSS, GEORGE ALAN MARTIN · 1988 to 1997
–
NIAID NIH HHS AI 21729NIAID NIH HHS AI 22229
6 · The paper itself

Abstract

We have previously reported the construction and characterization of an autonomously replicating plasmid in Trypanosoma brucei. In this plasmid the procyclic acidic repetitive protein (PARP) gene promoter drives the transcription of a selectable marker. Deletion of this promoter incapacitates the plasmid, suggesting its utilization as a promoter-trap. Three independent libraries were created by inserting variously digested T.brucei genomic DNA into this promoterless construct. Transfection of these libraries into procyclic T.brucei and the subsequent isolation of episomes led only to the reisolation of the PARP promoter. Additionally, a ribosomal RNA promoter failed to keep the construct as an episome, although it can sustain mRNA transcription in T.brucei and was shown to be an efficient promoter in this construct. Finally, by using a transient replication assay involving the methylation-sensitive restriction endonuclease DpnI to distinguish between input and replicated DNA, we showed that the PARP promoter-bearing construct could replicate autonomously in procyclic T.brucei, but the corresponding construct with the rRNA promoter could not. The close association between elements that sustain transcription and DNA replication in T.brucei mirrors results observed in several higher eukaryotes and their viruses and suggests an ancient origin of this feature.

Indexed as

DNA ReplicationMembrane GlycoproteinsPlasmidsPromoter Regions, GeneticProtozoan ProteinsAnimalsBase SequenceDNA Restriction EnzymesGene DeletionMolecular Sequence DataRNA, MessengerRNA, RibosomalTranscription, GeneticTransfectionTrypanosoma brucei bruceiVariant Surface Glycoproteins, TrypanosomaDNA Restriction EnzymesMembrane Glycoproteinsprocyclic acidic repetitive protein, TrypanosomaProtozoan ProteinsRNA, MessengerRNA, RibosomalVariant Surface Glycoproteins, Trypanosoma

Identifiers

PMID7937135
PMCPMC331897
OpenAlexW2004192924

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.