Evidence map›Paper›PMID 7878042›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1995

Mechanistically different catalytic antibodies obtained from immunization with a single transition-state analog.

J Guo, W Huang, G W Zhou, R J Fletterick, T S Scanlan

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1995. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

J GuoDepartment of Pharmaceutical Chemistry, University of California, San Francisco 94143-0446.
W Huang
G W Zhou
R J Fletterick
T S Scanlan
University of California, San Francisco · US

Funding

STRUCTURAL ANALYSIS OF ENGINEERING TRYPSINSR01DK039304 · NIDDK · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI FLETTERICK, ROBERT J · 1988 to 2002
$562k
NIDDK NIH HHS DK39304
6 · The paper itself

Abstract

The variable-region peptide sequence and steady-state kinetic behavior are compared for a family of catalytic antibodies that arose from the same immune response to a transition-state analog. The crystal structure of the most catalytically active member of the family (17E8) has been solved to 2.5 A resolution and shows that the antibody active site contains a SerH99-HisH35 (H = heavy chain) catalytic dyad analogous to the Ser-His-Asp catalytic triad of serine proteases. The variable-region peptide sequence of the next most active antibody (29G11) differs from that of 17E8 by nine heavy-chain point mutations, and results from computer modeling suggest that the three-dimensional structure of 29G11 is similar to that of 17E8. In addition, 29G11 is an efficient catalytic antibody; it possesses 26% of the hydrolytic activity of 17E8. There is one active-site mutation in 29G11 compared to 17E8; position 99 of the heavy chain of 29G11 contains a glycine residue in place of the nucleophilic serine at this position in 17E8. Consistent with this mutation, results from pH-rate studies and hydroxylamine partitioning experiments indicate that in contrast to the catalytic mechanism of 17E8, the mechanism of 29G11-catalyzed esterolysis does not feature nucleophilic catalysis.

Indexed as

Antibodies, CatalyticAmino Acid SequenceAnimalsAntibodies, MonoclonalBinding SitesBinding Sites, AntibodyCrystallography, X-RayEsterasesHaptensHydrogen-Ion ConcentrationImmunoglobulin Fab FragmentsImmunoglobulin Variable RegionIn Vitro TechniquesKineticsMiceMolecular Sequence DataAntibodies, CatalyticAntibodies, MonoclonalEsterasesHaptensImmunoglobulin Fab FragmentsImmunoglobulin Variable RegionNorleucine

Identifiers

PMID7878042
PMCPMC42586
OpenAlexW2079955360

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.