Evidence map›Paper›PMID 7828825›Full record

ArticleGenetics1994

Complete DNA sequence of the mitochondrial genome of the black chiton, Katharina tunicata.

J L Boore, W M Brown

Abstract read
In one paragraph

Article in Genetics, 1994. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 215 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Comprehensive mitochondrial genomics ofFrontiers in veterinary science · 2025
    Article
  5. A Chromosome-Level Genome Assembly of ChitonAnimals : an open access journal from MDPI · 2024
    Article
  6. Article
  7. Complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. The complete mitochondrial genome and phylogenetic analysis ofMitochondrial DNA. Part B, Resources · 2023
    Article
  12. Characterization of the complete mitochondrial genome ofMitochondrial DNA. Part B, Resources · 2022
    Article
  13. Molluscan mitochondrial genomes break the rules.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
  14. Mitochondrial genome ofCurrent research in parasitology & vector-borne diseases · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

J L BooreDepartment of Biology and Museum of Zoology, University of Michigan, Ann Arbor 48109-1048.
W M Brown
University of Michigan · US

Funding

NIGMS NIH HHS GM07544NIGMS NIH HHS GM30144
6 · The paper itself

Abstract

The DNA sequence of the 15,532-base pair (bp) mitochondrial DNA (mtDNA) of the chiton Katharina tunicata has been determined. The 37 genes typical of metazoan mtDNA are present: 13 for protein subunits involved in oxidative phosphorylation, 2 for rRNAs and 22 for tRNAs. The gene arrangement resembles those of arthropods much more than that of another mollusc, the bivalve Mytilus edulis. Most genes abut directly or overlap, and abbreviated stop codons are inferred for four genes. Four junctions between adjacent pairs of protein genes lack intervening tRNA genes; however, at each of these junctions there is a sequence immediately adjacent to the start codon of the downstream gene that is capable of forming a stem-and-loop structure. Analysis of the tRNA gene sequences suggests that the D arm is unpaired in tRNA(ser)(AGN), which is typical of metazoan mtDNAs, and also in tRNA(ser)(UCN), a condition found previously only in nematode mtDNAs. There are two additional sequences in Katharina mtDNA that can be folded into structures resembling tRNAs; whether these are functional genes is unknown. All possible codons except the stop codons TAA and TAG are used in the protein-encoding genes, and Katharina mtDNA appears to use the same variation of the mitochondrial genetic code that is used in Drosophila and Mytilus. Translation initiates at the codons ATG, ATA and GTG. A + T richness appears to have affected codon usage patterns and, perhaps, the amino acid composition of the encoded proteins. A 142-bp non-coding region between tRNA(glu) and CO3 contains a 72-bp tract of alternating A and T.

Indexed as

Amino Acid SequenceAnimalsBase SequenceCodonDNA, MitochondrialDNA, ProtozoanEukaryotaMitochondriaMolecular Sequence DataNucleic Acid ConformationProtein BiosynthesisProtozoan ProteinsRestriction MappingRNA, ProtozoanRNA, TransferCodonDNA, MitochondrialDNA, ProtozoanProtozoan ProteinsRNA, ProtozoanRNA, Transfer

Identifiers

PMID7828825
PMCPMC1206160
OpenAlexW2171346776

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.