Evidence map›Paper›PMID 7818488›Full record

ArticleThe Biochemical journal1994

The gene family of EF-hand calcium-binding proteins from the flagellum of Trypanosoma brucei.

Y Wu, J Deford, R Benjamin, M G Lee, L Ruben

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The Biochemical journal, 1994. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 42 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
  5. Bloodstream form pre-adaptation to the tsetse fly in Trypanosoma brucei.Frontiers in cellular and infection microbiology · 2013
    Review
  6. NMR structure of the calflagin Tb24 flagellar calcium binding protein of Trypanosoma brucei.Protein science : a publication of the Protein Society · 2012
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Review
  15. Review
  16. Article
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Y WuDepartment of Biological Sciences, Southern Methodist University, Dallas, TX 75235.
J Deford
R Benjamin
M G Lee
L Ruben
Southern Methodist University · USUniversity of North Texas · USColumbia University · US

Funding

MOLECULAR BIOLOGY OF CALCIUM PATHWAYS IN TRYPANOSOMESR01AI024627 · NIAID · SOUTHERN METHODIST UNIVERSITY · PI RUBEN, LAWRENCE · 1987 to 2002
$585k
NIAID NIH HHS AI24627
6 · The paper itself

Abstract

The flagellum of Trypanosoma brucei contains calmodulin, and a separate family of antigenically related EF-hand calcium-binding proteins which we call calflagins. The following study evaluates the structure and genomic organization of the calflagin family. Genomic Southern blots indicated that multiple copies of calflagin genes occurred in T. brucei, and that all of these copies were contained in a single 23 kb XhoI-XhoI fragment on chromosomes 15 and 16 mRNAs of 1.2 and 1.6 kb were identified in bloodstream and procyclic life-cycle stages. Genomic fragments of 2.5 and 1.7 kb were cloned that encoded calflagin sequences. The calflagin genes were arranged tandemly along the genomic fragments. Three new members of the calflagin family were sequenced from a cDNA clone and the two genomic clones. Two unrelated families of 3' flanking sequences were downstream from the calflagin genes. An open reading frame that was unrelated to any calflagin sequence was at the 5' end of the 2.5 kb genomic fragment. The deduced amino acid sequences of the genomic clones (called Tb-24 and Tb-1.7g) were similar to the previously described Tb-17. Each encoded an approximately 24 kDa protein which contained three EF-hand calcium-binding motifs and one degenerate EF-hand motif. The cDNA encoded a protein (called Tb-44A) which was approximately twice as large as the other calflagins. The large size resulted from a nearly direct repeat of 186 amino acids. In general, variability among the T. brucei calflagins was greater than observed for related proteins from Trypanosoma cruzi. We demonstrate that this variability resulted from amino acid substitutions at the N-terminus, C-terminal extensions, and duplication of internal segments.

Indexed as

Genes, ProtozoanAmino Acid SequenceAnimalsAntigens, ProtozoanBase SequenceBlotting, SouthernCalcium-Binding ProteinsCloning, MolecularDNA, ProtozoanMolecular Sequence DataProtozoan ProteinsTranscription, GeneticTrypanosoma brucei bruceiAntigens, ProtozoanCalcium-Binding ProteinsDNA, Protozoanflagellar calcium-binding protein, Trypanosoma cruziProtozoan Proteins

Identifiers

PMID7818488
PMCPMC1137409
OpenAlexW1639836439

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.