ArticleMolecular & general genetics : MGG1994
Comparative analysis of microsatellite DNA polymorphism in landraces and cultivars of rice.
Article in Molecular & general genetics : MGG, 1994. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.
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Who cites it
32 citing papers in PubMed.
- Genetic Improvement in Plant Architecture, Maturity Duration and Agronomic Traits of Three Traditional Rice Landraces through Gamma Ray-Based Induced Mutagenesis.Plants (Basel, Switzerland) · 2022Article
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- Diverse Rice Landraces of North-East India Enables the Identification of Novel Genetic Resources forFrontiers in plant science · 2017Article
- Genome-Wide Single-Nucleotide Polymorphisms in CMS and Restorer Lines Discovered by Genotyping Using Sequencing and Association with Marker-Combining Ability for 12 Yield-Related Traits inFrontiers in plant science · 2017Article
- Identification and analysis of novel salt responsive candidate gene based SSRs (cgSSRs) from rice (Oryza sativa L.).BMC plant biology · 2015Article
- Screening of rice landraces for salinity tolerance at seedling stage through morphological and molecular markers.Physiology and molecular biology of plants : an international journal of functional plant biology · 2014Article
- Genetic diversity of the conserved motifs of six bacterial leaf blight resistance genes in a set of rice landraces.BMC genetics · 2014Article
- Article
- Genetic diversity and population structure of rice landraces from Eastern and North Eastern States of India.BMC genetics · 2013Article
- Development of SSR markers and construction of a linkage map in jute.Journal of genetics · 2012Article
- Genetic relationship of Curcuma species from Northeast India using PCR-based markers.Molecular biotechnology · 2011Article
- Discovery of genome-wide DNA polymorphisms in a landrace cultivar of Japonica rice by whole-genome sequencing.Plant & cell physiology · 2011Article
- A set of multiplex panels of microsatellite markers for rapid molecular characterization of rice accessions.BMC plant biology · 2007Article
- Genetic diversity analysis of traditional and improved Indonesian rice (Oryza sativa L.) germplasm using microsatellite markers.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2007Article
- Genetic diversity among cultivars, landraces and wild relatives of rice as revealed by microsatellite markers.Journal of applied genetics · 2007Article
- Comparative analyses of genetic diversities within tomato and pepper collections detected by retrotransposon-based SSAP, AFLP and SSR.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2005Article
- Genetic diversity and phylogeny of Japanese sake-brewing rice as revealed by AFLP and nuclear and chloroplast SSR markers.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2004Article
- Sequence variations of simple sequence repeats on chromosome-4 in two subspecies of the Asian cultivated rice.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2004Article
- Molecular diversity and multilocus organization of the parental lines used in the International Rice Molecular Breeding Program.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2003Article
- Swiss Mattenklee landraces, a distinct and diverse genetic resource of red clover (Trifolium pratense L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2003Article
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5 authors.
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Abstract
Genetic polymorphisms of ten microsatellite DNA loci were examined among 238 accessions of landraces and cultivars that represent a significant portion of the distribution range for both indica and japonica groups of cultivated rice. In all, 93 alleles were identified with these ten markers. The number of alleles varied from a low of 3 or 4 at each of four loci, to an intermediate value of 9-14 at five loci, and to an extraordinarily high 25 at one locus. The numbers of alleles per locus are much larger than those detected using other types of markers. The number of alleles detected at a locus is significantly correlated with the number of simple sequence repeats in the targeted microsatellite DNA. Indica rice has about 14% more alleles than japonica rice, and such allele number differences are more pronounced in landraces than in cultivars. The indica-japonica differentiation component accounted for about 10% of the diversity in the total sample, and twice as much differentiation was detected in cultivars as in landraces. About two-thirds as many alleles were observed in cultivars as in landraces; another two-thirds of the alleles in the cultivar group were found in modern elite cultivars or parents of hybrid rice. The majority of the simple sequence repeat (SSR) alleles that were present in high or intermediate frequencies in landraces ultimately survived into modern elite cultivars and hybrids. The greater resolving power and the efficient production of massive amounts of SSR data may be particularly useful for germplasm assessment and evolutionary studies of crop plants.
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