Evidence map›Paper›PMID 7799927›Full record

ArticleMolecular and cellular biology1995

Position-independent transgene expression mediated by boundary elements from the apolipoprotein B chromatin domain.

M Kalos, R E Fournier

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 1995. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 127 citations in OpenAlex.

  1. Review
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  7. Identification, genome mapping, and CTCF binding of potential insulators within the FXYD5-COX7A1 locus of human chromosome 19q13.12.Mammalian genome : official journal of the International Mammalian Genome Society · 2006
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

M KalosProgram in Molecular Medicine, Fred Hutchinson Cancer Research Center, Seattle, Washington 98104.
R E Fournier
Fred Hutch Cancer Center · US

Funding

GENETIC ANALYSIS OF CELL-TYPE-SPECIFIC FUNCTIONSR01GM026449 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI FOURNIER, RAYMOND E · 1985 to 2006
$4.3M
COMPREHENSIVE GENETIC ANALYSIS OF TAT EXTINCTIONF32GM014508 · NIGMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KALOS, MICHAEL D · 1991 to 1993
–
NIGMS NIH HHS GM14508NIGMS NIH HHS GM26449
6 · The paper itself

Abstract

The human apolipoprotein B (apoB) gene resides within a 47.5-kb chromatin domain that is flanked by sequences that bind to the nuclear matrix. These matrix attachment regions (MARs) are boundaries between nuclease-sensitive and -resistant chromatin. As domain boundaries are thought to function as insulator elements, shielding sequences between them from effects of neighboring chromatin, this raised the possibility that the apoB MARs have functions that could be assayed by transfection. To test this possibility, we examined effects of the apoB MARs on transgene expression in transiently and stably transfected rat and human hepatoma cells. The apoB MARs had no effects on expression of transiently transfected reporters, but they altered expression of stably integrated transgenes in dramatic and reproducible ways. Single integrated copies of transgenes that contained the apoB promoter and second intron enhancer, which are sufficient for high-level expression in transient assays, were expressed at low and variable levels in stable transfectant clones. In contrast, transgenes containing the apoB 5' and 3' MARs were expressed at levels nearly 200-fold higher than levels of the minimal reporters in stable transfectants, and expression was position independent. Transgenes that contained the apoB MARs and an additional 3.3 kb of apoB 5' flanking sequence were also expressed in an elevated, position-independent manner. Surprisingly, tandem transgene arrays in multicopy transfectants were transcriptionally inactive. These observations suggest that the apoB MARs function as insulator elements, shielding transgene expression from effects of neighboring chromatin domains.

Indexed as

Gene Expression RegulationRegulatory Sequences, Nucleic AcidAnimalsApolipoproteins BCells, CulturedChromatinEnhancer Elements, GeneticGenesIn Vitro TechniquesPromoter Regions, GeneticRatsRestriction MappingRNA, MessengerTranscription, GeneticTransfectionApolipoproteins BChromatinRNA, Messenger

Identifiers

PMID7799927
PMCPMC231934
OpenAlexW2145899011

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.