Evidence map›Paper›PMID 7791778›Full record

ArticleMolecular and cellular biology1995

Dioxin induces localized, graded changes in chromatin structure: implications for Cyp1A1 gene transcription.

S T Okino, J P Whitlock

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 1995. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 85 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Multigenerational and Transgenerational Effects of Dioxins.International journal of molecular sciences · 2019
    Review
  5. Article
  6. Article
  7. Article
  8. Roles of coactivator proteins in dioxin induction of CYP1A1 and CYP1B1 in human breast cancer cells.Toxicological sciences : an official journal of the Society of Toxicology · 2009
    Article
  9. Article
  10. Understanding the human health effects of chemical mixtures.Environmental health perspectives · 2002
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

S T OkinoDepartment of Molecular Pharmacology, Stanford University School of Medicine, California 94305-5332, USA.
J P Whitlock
Stanford University · US

Funding

MECHANISM OF DIOXIN ACTIONR01CA053887 · NCI · STANFORD UNIVERSITY · PI WHITLOCK, JAMES P · 1998 to 2001
$537k
MECHANISM OF DIOXIN ACTIONR35CA053887 · NCI · STANFORD UNIVERSITY · PI WHITLOCK, JAMES P · 1991 to 1997
–
NCI NIH HHS CA 53887NIEHS NIH HHS ES05598
6 · The paper itself

Abstract

In mouse hepatoma cells, the environmental contaminant 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD, or dioxin) induces Cyp1A1 gene transcription, a process that requires two basic helix-loop-helix regulatory proteins, the aromatic hydrocarbon receptor (AhR) and the aromatic hydrocarbon receptor nuclear translocator (Arnt). We have used a ligation-mediated PCR technique to analyze dioxin-induced changes in protein-DNA interactions and chromatin structure of the Cyp1A1 enhancer-promoter in its native chromosomal setting. Dioxin-induced binding of the AhR/Arnt heteromer to enhancer chromatin is associated with a localized (about 200 bp) alteration in chromatin structure that is manifested by increased accessibility of the DNA; these changes probably reflect direct disruption of a nucleosome by AhR/Arnt. Dioxin induces analogous AhR/Arnt-dependent changes in chromatin structure and accessibility at the Cyp1A1 promoter. However, the changes at the promoter must occur by a different, more indirect mechanism, because they are induced from a distance and do not reflect a local effect of AhR/Arnt binding. Dose-response experiments indicate that the changes in chromatin structure at the enhancer and promoter are graded and mirror the graded induction of Cyp1A1 transcription by dioxin. We discuss these results in terms of a TCDD-induced shift in an equilibrium between nucleosomal and nonnucleosomal chromatin configurations.

Indexed as

DNA-Binding ProteinsTranscription, GeneticAnimalsAryl Hydrocarbon Receptor Nuclear TranslocatorBase SequenceCarcinoma, HepatocellularChromatinCytochrome P-450 Enzyme SystemDeoxyribonuclease IDNAEnhancer Elements, GeneticEnzyme InductionLiver NeoplasmsMiceModels, GeneticMolecular Sequence DataArnt protein, mouseAryl Hydrocarbon Receptor Nuclear TranslocatorChromatinCytochrome P-450 Enzyme SystemDeoxyribonuclease Idimethyl sulfateDNADNA-Binding ProteinsPolychlorinated DibenzodioxinsReceptors, Aryl HydrocarbonSulfuric Acid EstersTranscription Factors

Identifiers

PMID7791778
PMCPMC230609
OpenAlexW1826000501

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.