Evidence map›Paper›PMID 7777502›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America1995

Efficient high-resolution genetic mapping of mouse interspersed repetitive sequence PCR products, toward integrated genetic and physical mapping of the mouse genome.

L McCarthy, K Hunter, L Schalkwyk, L Riba, S Anson, R Mott, W Newell, C Bruley, I Bar, E Ramu

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 1995. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Characterization of an abundant short interspersed nuclear element (SINE) present in Canis familiaris.Mammalian genome : official journal of the International Mammalian Genome Society · 1998
    Article
  7. IRS-PCR-based genetic mapping of the huntingtin interacting protein gene (HIP1) on mouse chromosome 5.Mammalian genome : official journal of the International Mammalian Genome Society · 1998
    Article
  8. Article
  9. Genetic mapping of 18S ribosomal RNA-related loci to mouse chromosomes 5, 6, 9, 12, 17, 18, 19, and X.Mammalian genome : official journal of the International Mammalian Genome Society · 1996
    Article
  10. Article
  11. Generation and mapping of Mus spretus strain-specific markers for rapid genomic scanning.Mammalian genome : official journal of the International Mammalian Genome Society · 1996
    Article
  12. A rat genetic map constructed by representational difference analysis markers with suitability for large-scale typing.Proceedings of the National Academy of Sciences of the United States of America · 1996
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

L McCarthyImperial Cancer Research Fund, London, United Kingdom.
K Hunter
L Schalkwyk
L Riba
S Anson
R Mott
W Newell
C Bruley
I Bar
E Ramu
The Honourable Society of Lincoln's Inn · GB

Funding

STUDY OF THE FIBRONECTIN FUNCTIONP01HL041484 · NHLBI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI ROSENBERG, ROBERT D · 1988 to 2000
$2.7M
HIGH THROUGHPUT LOW COST IRS-PCR BASED GENOTYPINGR01HG000299 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI HOUSMAN, DAVID E · 1990 to 2001
$1.1M
EXON SCANNING FOR THE MYOTONIC DYSTROPHY GENEF32GM014788 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI HUNTER, KENT W · 1992 to 1993
–
NHGRI NIH HHS HG00299NHLBI NIH HHS HL41484NIGMS NIH HHS 1-F32 GM-14788-01Wellcome Trust
6 · The paper itself

Abstract

The ability to carry out high-resolution genetic mapping at high throughput in the mouse is a critical rate-limiting step in the generation of genetically anchored contigs in physical mapping projects and the mapping of genetic loci for complex traits. To address this need, we have developed an efficient, high-resolution, large-scale genome mapping system. This system is based on the identification of polymorphic DNA sites between mouse strains by using interspersed repetitive sequence (IRS) PCR. Individual cloned IRS PCR products are hybridized to a DNA array of IRS PCR products derived from the DNA of individual mice segregating DNA sequences from the two parent strains. Since gel electrophoresis is not required, large numbers of samples can be genotyped in parallel. By using this approach, we have mapped > 450 polymorphic probes with filters containing the DNA of up to 517 backcross mice, potentially allowing resolution of 0.14 centimorgan. This approach also carries the potential for a high degree of efficiency in the integration of physical and genetic maps, since pooled DNAs representing libraries of yeast artificial chromosomes or other physical representations of the mouse genome can be addressed by hybridization of filter representations of the IRS PCR products of such libraries.

Indexed as

Chromosome MappingRepetitive Sequences, Nucleic AcidRestriction MappingAnimalsChromosomes, Artificial, YeastCrosses, GeneticGenetic LinkageGenomic LibraryMiceMice, Inbred C57BLPolymerase Chain Reaction

Identifiers

PMID7777502
PMCPMC41682
OpenAlexW2021994319

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.