Evidence map›Paper›PMID 7729692›Full record

ArticleGenetica1994

Identification of a human specific Alu insertion in the factor XIIIB gene.

D H Kass, C Aleman, M A Batzer, P L Deininger

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Genetica, 1994. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Standardized nomenclature for Alu repeats.Journal of molecular evolution · 1996
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

D H KassDepartment of Biochemistry and Molecular Biology, Louisiana State University Medical Center, New Orleans 70112.
C Aleman
M A Batzer
P L Deininger
Louisiana State University · USLawrence Livermore National Laboratory · USUniversity Medical Center New Orleans · US

Funding

HUMAN INTERSPERSED REPEATED DNA SEQUENCESR01HG000340 · NHGRI · LOUISIANA STATE UNIV HSC NEW ORLEANS · PI DEININGER, PRESCOTT L · 1990 to 1992
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HUMAN-SPECIFIC ALU-SEQUENCE TAGGED SITESR01HG000770 · NHGRI · LOUISIANA STATE UNIV HSC NEW ORLEANS · PI DEININGER, PRESCOTT L · 1993 to 1995
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NHGRI NIH HHS HG 00340NHGRI NIH HHS HG 00770
6 · The paper itself

Abstract

The factor XIIIB gene was examined to determine the nature of a previously described 300 bp restriction fragment length polymorphism (RFLP) seen in the human population. Polymerase chain reaction analysis of different regions within the factor XIIIB gene was carried out to define a high resolution map of the region encompassing the polymorphism, followed by DNA sequence analysis. An Alu insertion was found to be the source of this variation. This Alu repeat is a member of the human specific-1 (HS-1) subfamily, although one of the five diagnostic nucleotides is a cattarhine specific (CS) subfamily mutation, suggesting that it may represent an intermediate form in the evolution between these two subfamilies. Subsequently, we developed a PCR-based assay to detect the polymorphism, rendering it a more useful marker for genetic linkage studies and genome mapping. This insertion is also a valuable polymorphism for human population studies, as demonstrated by the large variations in allele frequencies seen in three population groups.

Indexed as

GenesPolymorphism, Restriction Fragment LengthRepetitive Sequences, Nucleic AcidAllelesAsian PeopleBase SequenceBlack PeopleFactor XIIIGene FrequencyHumansMolecular Sequence DataMutagenesis, InsertionalPolymerase Chain ReactionSequence AlignmentSequence Homology, Nucleic AcidWhite PeopleFactor XIIIfactor XIIIb

Identifiers

PMID7729692
OpenAlexW2172231676

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.