Evidence map›Paper›PMID 7717395›Full record

ArticleAmerican journal of human genetics1995

Identification of polymorphisms and sequence variants in the human homologue of the mouse natural resistance-associated macrophage protein gene.

J Liu, T M Fujiwara, N T Buu, F O Sánchez, M Cellier, A J Paradis, D Frappier, E Skamene, P Gros, K Morgan

Open access · greenAbstract read
In one paragraph

Article in American journal of human genetics, 1995. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 172 citations in OpenAlex.

  1. Article
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  8. Polymorphisms of the NRAMP1 gene: distribution and susceptibility to the development of pulmonary tuberculosis in the Greek population.Medical science monitor : international medical journal of experimental and clinical research · 2011
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  13. Alleles of the NRAMP1 gene are risk factors for pediatric tuberculosis disease.Proceedings of the National Academy of Sciences of the United States of America · 2005
    Article
  14. Variants of the natural resistance-associated macrophage protein 1 gene (NRAMP1) are associated with severe forms of pulmonary tuberculosis.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2005
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

J LiuMcGill Centre for the Study of Host Resistance, McGill University, Montreal, Canada.
T M Fujiwara
N T Buu
F O Sánchez
M Cellier
A J Paradis
D Frappier
E Skamene
P Gros
K Morgan
McGill University · CA

Funding

NRAMP1 IN MACROPHAGE DEFENCES AGAINST INFECTIONSR01AI035237 · NIAID · MCGILL UNIVERSITY · PI GROS, PHILIPPE · 1993 to 2015
$2.3M
NIAID NIH HHS R01 AI35237-02
6 · The paper itself

Abstract

The most common mycobacterial disease in humans is tuberculosis, and there is evidence for genetic factors in susceptibility to tuberculosis. In the mouse, the Bcg gene controls macrophage priming for activation and is a major gene for susceptibility to infection with mycobacteria. A candidate gene for Bcg was identified by positional cloning and was designated "natural resistance-associated macrophage protein gene" (Nramp1), and the human homologue (NRAMP1) has recently been cloned. Here we report on (1) the physical mapping of NRAMP1 close to VIL in chromosome region 2q35 by PCR analysis of somatic cell hybrids and YAC cloning and (2) the identification of nine sequence variants in NRAMP1. Of the four variants in the coding region, there were two missense mutations and two silent substitutions. The missense mutations were a conservative alanine-to-valine substitution at codon 318 in exon 9 and an aspartic acid-to-asparagine substitution at codon 543 in the predicted cytoplasmic tail of the NRAMP1 protein. A microsatellite was located in the immediate 5' region of the gene, three variants were in introns, and one variant was located in the 3' UTR. The allele frequencies of each of the nine variants were determined in DNA samples of 60 Caucasians and 20 Asians. In addition, we have physically linked two highly polymorphic microsatellite markers, D2S104 and D2S173, to NRAMP1 on a 1.5-Mb YAC contig. These molecular markers will be useful to assess the role of NRAMP1 is susceptibility to tuberculosis and other macrophage-mediated diseases.

Indexed as

Cation Transport ProteinsGenetic VariationImmunity, InnateIron-Binding ProteinsPolymorphism, GeneticAllelesAnimalsBase SequenceCarrier ProteinsChromosome MappingHumansHybrid CellsMembrane ProteinsMiceMolecular Sequence DataNatural Resistance-associated Macrophage Protein 1Carrier ProteinsCation Transport ProteinsIron-Binding ProteinsMembrane ProteinsNatural Resistance-associated Macrophage Protein 1Solute Carrier Family 11, Member 2

Identifiers

PMID7717395
PMCPMC1801220
OpenAlexW1522105508

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.