Evidence map›Paper›PMID 7659527›Full record

ArticleNucleic acids research1995

Increasing binding of a transcription factor immediately downstream of the cap site of a cytomegalovirus gene represses expression.

X Y Zhang, Y S Ni, Z Saifudeen, C K Asiedu, P C Supakar, M Ehrlich

Abstract read
In one paragraph

Article in Nucleic acids research, 1995. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

X Y ZhangDepartment of Biochemistry, Tulane Medical School, New Orleans, LA 70112, USA.
Y S Ni
Z Saifudeen
C K Asiedu
P C Supakar
M Ehrlich

Funding

RECOGNITION OF METHYLATED DNA BY MAMMALIAN PROTEINSR01GM033999 · NIGMS · TULANE UNIVERSITY OF LOUISIANA · PI EHRLICH, MELANIE · 1985 to 1995
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NIGMS NIH HHS GM33999
6 · The paper itself

Abstract

A closely related family of ubiquitous DNA binding proteins, called MDBP, binds with high affinity to two 14 base pair (bp) sites within the human cytomegalovirus immediate early gene 1 (CMV IE1) enhancer and with low affinity to one site beginning 5 bp downstream of the CMV IE1 transcription start point (+5 site). Unlike several cap position downstream MDBP sites in mammalian genes, these MDBP sites do not require cytosine methylation for optimal binding. Mutation of one of the enhancer MDBP sites to prevent MDBP recognition modestly increased the function of a neighboring CREB binding site in a transient transfection assay in the context of one promoter construct. A much larger effect on reporter gene expression (a 10-fold reduction) was seen when the low affinity MDBP recognition sequence at position +5 was converted to a high affinity site in a plasmid containing the CMV IE1 promoter upstream of the reporter gene. Evidence that the increased binding of MDBP at the mutant site is largely responsible for the observed results was provided by transfection experiments with this high affinity MDBP +5 site re-mutated to a non-binding site and by in vitro transcription assay.

Indexed as

Base SequenceBinding SitesCell LineCyclic AMP Response Element-Binding ProteinCytomegalovirusDNA-Binding ProteinsDNA, ViralEnhancer Elements, GeneticGene Expression Regulation, ViralGenes, Immediate-EarlyGenes, ReporterHumansMolecular Sequence DataMutationPolydeoxyribonucleotidesPromoter Regions, GeneticCyclic AMP Response Element-Binding ProteinDNA-Binding ProteinsDNA, ViralMBD1 protein, humanPolydeoxyribonucleotidesTranscription Factors

Identifiers

PMID7659527
PMCPMC307145

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.