Evidence map›Paper›PMID 7657830›Full record

ArticleThe Journal of clinical investigation1995

Ethnic differences of polymorphism of an immunoglobulin VH3 gene.

E H Sasso, J H Buckner, L A Suzuki

Open access · hybridAbstract readComparative Study
In one paragraph

Article in The Journal of clinical investigation, 1995. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 48 citations in OpenAlex.

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  13. Fifty-million-year-old polymorphism at an immunoglobulin variable region gene locus in the rabbit evolutionary lineage.Proceedings of the National Academy of Sciences of the United States of America · 1999
    Article
  14. Article
  15. The super-information age of immunoglobulin genetics.The Journal of experimental medicine · 1998
    Article
  16. Determination of gene organization in individual haplotypes by analyzing single DNA fragments from single spermatozoa.Proceedings of the National Academy of Sciences of the United States of America · 1998
    Article
  17. Article
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  20. Evolution by the birth-and-death process in multigene families of the vertebrate immune system.Proceedings of the National Academy of Sciences of the United States of America · 1997
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

E H SassoDivision of Rheumatology, University of Washington, Seattle 98105, USA.
J H Buckner
L A Suzuki
University of Washington · US

Funding

RESEARCH TRAINING IN RHEUMATOLOGYT32AR007108 · NIAMS · UNIVERSITY OF WASHINGTON · PI Shaun Jackson, Tomas M Mustelin · 1986 to 2026
$6.6M
V GENE POLYMORPHISM IN SLE AND RAR29AR040561 · NIAMS · UNIVERSITY OF WASHINGTON · PI SASSO, ERIC H · 1991 to 1995
–
NCRR NIH HHS RR 05432NIAMS NIH HHS AR 07108NIAMS NIH HHS AR 40561
6 · The paper itself

Abstract

The VH26 germline gene occupies two different loci, due to gene duplication, and is one of the most frequently expressed human immunoglobulin VH genes. This report identifies the alleles of each VH26 locus and describes distinct patterns of VH26 polymorphism in three ethnic groups. Oligonucleotide probes targeting VH26 were used in sequence-specific RFLP analysis of DNA from 72 Caucasians, 52 Asians, 35 American Blacks, and members of six families. The A locus, on a 7.0-kb TaqI band, was detected in 89% of Caucasians, 75% of Asians, and 26% of Blacks (chi2 = P < 0.0005). The B locus, detected on a 5.0-kb band in nearly all subjects, was found to have additional alleles occurring at 6.8 kb in 10% of Asians and 3% of Blacks (chi2 = 7.8, P < 0.02) and at 3.7 kb in 1.4% of Caucasians, 21% of Asians, and (9% of Blacks (chi2 = 13.8, P < 0.001). In Asians, only, the 3.7-kb hybridization band represented a multiple-duplication unit containing three or four gene copies. Duplications of other VH26 alleles, and mull alleles of the B locus, were also seen. An exact VH26 sequence was cloned from the 5.0-kb allele and likely exists in the 7.0- and 6.8-kb alleles. A novel sequence cloned from the 3.7-kb allele differed from VH26 by nine nucleotides and appears to have evolved by gene conversion in CDR2. The total diploid gene dose of the A and B loci ranged from one to as many as six copies of VH26-containing genes, and from zero to as many as six to eight copies of the 3.7-kb allele. We conclude that ethnic differences in polymorphism exist at both VH26 loci. These differences could influence VH26 expression because they involve variations in gene copy number and coding region sequence.

Indexed as

Chromosomes, Human, Pair 14Genes, ImmunoglobulinPolymorphism, Restriction Fragment LengthAllelesAsiaAsian PeopleBase SequenceBlack or African AmericanBlack PeopleDNADNA PrimersElectrophoresis, Agar GelEthnicityFamilyFemaleHumansDNADNA PrimersImmunoglobulin Heavy ChainsImmunoglobulin Variable RegionOligonucleotide Probes

Identifiers

PMID7657830
PMCPMC185785
OpenAlexW2043100810

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.