Evidence map›Paper›PMID 7579171›Full record

ArticlePlant molecular biology1995

Site-directed mutagenesis of the enhancer region of the 780 gene promoter of T-DNA.

K O'Grady, W B Gurley

Abstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 1995. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 96% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

K O'GradyDepartment of Microbiology and Cell Science, University of Florida, Gainesville 32611-0700, USA.
W B Gurley
University of Florida · US

Funding

CIS &TRANS-ACTING COMPONENTS OF T-DNA PROMOTER FUNCTIONR01GM038278 · NIGMS · UNIVERSITY OF FLORIDA · PI GURLEY, WILLIAM B · 1988 to 1992
–
NIGMS NIH HHS R01GM38278
6 · The paper itself

Abstract

Potential regulatory sequences within the enhancer-like region of the 780 gene promoter (Agrobacterium tumefaciens T-DNA) were identified by site-directed mutagenesis. Transcriptional activity of the mutated promoter was analyzed by S1 nuclease mapping of RNA from crown gall tumors of sunflower incited using a T-DNA-based vector. Variability in expression levels were minimized by the use of an internal reference gene and the pooling of at least 200 tumors per construct tested. This approach identified numerous sequences that influence transcriptional activity in either a positive or negative manner. Eight regions of positive influence and three of negative were identified from analysis of those mutations that exhibited low variability in expression (P < 0.005) and affected activity by at least 20%.

Indexed as

Mutagenesis, Site-DirectedAgrobacterium tumefaciensBase SequenceDNA, BacterialEnhancer Elements, GeneticMolecular Sequence DataPromoter Regions, GeneticDNA, BacterialT-DNA

Identifiers

PMID7579171
OpenAlexW1967711060

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.