Evidence map›Paper›PMID 7556082›Full record

ArticleThe EMBO journal1995

(Beta alpha)8-barrel proteins of tryptophan biosynthesis in the hyperthermophile Thermotoga maritima.

R Sterner, A Dahm, B Darimont, A Ivens, W Liebl, K Kirschner

Abstract read
In one paragraph

Article in The EMBO journal, 1995. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Establishing wild-type levels of catalytic activity on natural and artificial (beta alpha)8-barrel protein scaffolds.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  3. Article
  4. Article
  5. Article
  6. Directed evolution of a (beta alpha)8-barrel enzyme to catalyze related reactions in two different metabolic pathways.Proceedings of the National Academy of Sciences of the United States of America · 2000
    Article
  7. Article
  8. Article
  9. Both DNA gyrase and reverse gyrase are present in the hyperthermophilic bacterium Thermotoga maritima.Proceedings of the National Academy of Sciences of the United States of America · 1997
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

R SternerAbteilung für Biophysikalische Chemie, Universität Basel, Switzerland.
A Dahm
B Darimont
A Ivens
W Liebl
K Kirschner
University of Basel · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To better understand the evolution of a key metabolic pathway, we have sequenced the trpCFBA gene cluster of the hyperthermophilic bacterium Thermotoga maritima. The genes were cloned by complementation in vivo of trp deletion strains of Escherichia coli. The new sequences, together with earlier findings, establish that the trp operon of T.maritima has the order trpE(G.D)CFBA, which might represent the ancestral organization of the tryptophan operon. Heterologous expression of the trp(G.D) and trpC genes in E.coli and N-terminal sequencing of their polypeptide products showed that their translation is initiated at the rate start codons TTG and ATC, respectively. Consequently, the N-terminus of the trp(G.D) fusion protein is 43 residues shorter than previously postulated. Amino acid composition and sequence analyses of the protein products of T.maritima trpC (indoleglycerol phosphate synthase), trpF (phosphoribosyl anthranilate isomerase) and trpA (alpha-subunit of tryptophan synthase) suggest that these thermostable (beta alpha)8-barrel proteins may be stabilized by additional salt bridges, compared with the mesostable forms. Another notable feature is the predicted lack of the N-terminal helix alpha 0 in the alpha-subunit of tryptophan synthase.

Indexed as

Aldose-Ketose IsomerasesAmino Acid SequenceBacterial ProteinsBase SequenceCarbohydrate EpimerasesCloning, MolecularCodon, InitiatorEnzyme StabilityEscherichia coliGenetic Complementation TestGram-Negative Anaerobic BacteriaHot TemperatureIndole-3-Glycerol-Phosphate SynthaseMolecular Sequence DataMultienzyme ComplexesOperonAldose-Ketose IsomerasesBacterial ProteinsCarbohydrate EpimerasesCodon, InitiatorIndole-3-Glycerol-Phosphate SynthaseMultienzyme Complexesphosphoribosylanthranilate isomerase-indoleglycerol-phosphate synthaseRecombinant ProteinsTryptophanTryptophan Synthase

Identifiers

PMID7556082
PMCPMC394530
OpenAlexW106827330

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.