Evidence map›Paper›PMID 7541776›Full record

ArticleImmunogenetics1995

B-cell-specific demethylation of BTK, the defective gene in X-linked agammaglobulinemia.

O Parolini, J Rohrer, L H Shapiro, M E Conley

Abstract read
PubMed Publisher
In one paragraph

Article in Immunogenetics, 1995. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Antithetic effects of MBD2a on gene regulation.Molecular and cellular biology · 2003
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

O ParoliniDepartment of Immunology, St. Jude Children's Research Hospital, Memphis, TN 38101, USA.
J Rohrer
L H Shapiro
M E Conley
St. Jude Children's Research Hospital · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
NCI NIH HHS P30 CA21765NIAID NIH HHS AI 129259
6 · The paper itself

Abstract

BTK, the gene that is defective in X-linked agammaglobulinemia, encodes a cytoplasmic tyrosine kinase that is critical for B-cell proliferation, or survival. To identify regulatory elements that control the expression of BTK we evaluated the methylation pattern of this gene in cell lines and in freshly isolated cells. An Hpa II site that was specifically demethylated in mature B cells but not in pre-B cells, T cells, neutrophils, or nonhematopoietic cells was identified in the tenth intron of BTK. In a 40 kilobase (kb) segment of DNA spanning the entire coding region of BTK plus 3 kb upstream of the first exon there were no other sites that demonstrated lineage-specific demethylation. The B-cell-specific demethylation site in intron 10, which falls within the SH2 domain, 26 kb distal to the first exon, occurs in a region rich in regulatory elements including two E2 boxes, two AP-2 sites, and a cAMP response element. It is likely that this site plays a role in maintaining BTK transcription in mature B cells.

Indexed as

Genetic LinkageX ChromosomeAgammaglobulinaemia Tyrosine KinaseAgammaglobulinemiaBase SequenceB-LymphocytesCell LineDeoxyribonuclease HpaIIDeoxyribonucleases, Type II Site-SpecificDNA PrimersHumansLymphocyte ActivationMethylationMolecular Sequence DataProtein-Tyrosine KinasesT-LymphocytesAgammaglobulinaemia Tyrosine KinaseBTK protein, humanDeoxyribonuclease HpaIIDeoxyribonucleases, Type II Site-SpecificDNA PrimersProtein-Tyrosine Kinases

Identifiers

PMID7541776
OpenAlexW2001254527

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.