Evidence map›Paper›PMID 7520568›Full record

ArticleNucleic acids research1994

The human Y4 small cytoplasmic RNA gene is controlled by upstream elements and resides on chromosome 7 with all other hY scRNA genes.

R J Maraia, N Sasaki-Tozawa, C T Driscoll, E D Green, G J Darlington

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 1994. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 47 citations in OpenAlex.

  1. Review
  2. Post-transcriptional checkpoints in autoimmunity.Nature reviews. Rheumatology · 2023
    Review
  3. Article
  4. Review
  5. Review
  6. Y RNAs: Biogenesis, Function and Implications for the Cardiovascular System.Advances in experimental medicine and biology · 2020
    Review
  7. Frontiers in oncology · 2020
    Article
  8. Article
  9. Ro60 and Y RNAs: structure, functions, and roles in autoimmunity.Critical reviews in biochemistry and molecular biology · 2019
    Review
  10. Article
  11. Article
  12. Functional roles of non-coding Y RNAs.The international journal of biochemistry & cell biology · 2015
    Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Evolution of the vertebrate Y RNA cluster.Theory in biosciences = Theorie in den Biowissenschaften · 2007
    Article
  18. Human La is found at RNA polymerase III-transcribed genes in vivo.Proceedings of the National Academy of Sciences of the United States of America · 2005
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

R J MaraiaLaboratory of Molecular Growth Regulation, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892.
N Sasaki-Tozawa
C T Driscoll
E D Green
G J Darlington
National Institutes of Health · USTexas Children's Hospital · USWashington University in St. Louis · US

Funding

LIVER-SPECIFIC GENE REGULATION BY C/EBP-LIKE TRANSFACTORR01DK045285 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI DARLINGTON, GRETCHEN J. · 1993 to 2000
$261k
SURGICAL APPROACH TO HEPATOCELLULAR TRANSPLANTATIONP01DK044080 · NIDDK · BAYLOR COLLEGE OF MEDICINE · 1991 to 1995
–
YEAST ARTIFICIAL CHROMOSOME-BASED GENOME MAPPINGP50HG000201 · NHGRI · WASHINGTON UNIVERSITY · PI BROWNSTEIN, BERNARD H · 1990 to 1997
–
NHGRI NIH HHS P50-HG00201NIDDK NIH HHS DK44080NIDDK NIH HHS DK45285
6 · The paper itself

Abstract

Ro ribonucleoproteins (RNP) constitute a class of evolutionarily conserved small cytoplasmic (sc) RNPs whose functions are unknown. In human cells four distinctive scRNAs designated hY1, hY3, hY4 and hY5 are synthesized by RNA polymerase III (pol III) and accumulate as components of Ro scRNPs. The previously isolated hY1 and hY3 genes contain upstream sequences similar to the class III promoters for U6 and 7SK snRNAs. Additional mammalian Y scRNA genes have been refractory to cloning due to interference from numerous hY-homologous pseudogenes and studies of hY RNA genes have been sparse. Although homologs of hY1 and hY3 RNAs exist in rodent cells, the smaller Y4 and Y5 RNAs do not which has allowed us to localize the hY4 scRNA gene to human chromosome 7 by assaying for its transcript in rodent X human somatic cell hybrids (SCH). A chromosome 7-enriched yeast artificial chromosome (YAC) library was then screened and the authentic hY4 sequence was isolated by strepavidin--biotin-mediated hybrid-selection followed by poly(dA)-tailing and hemispecific PCR. The region upstream of the hY4 sequence contains a TATAAAA motif centered at -26, a candidate proximal sequence element at -63, and three octamer-like sequences located between -260 and -200. hY4 RNA is readily detectable on Northern blots after transient transfection of the hY4 gene into mouse cells but not after transfection of a construct in which the 5' flanking region was deleted. SCHs and chromosome 7-enriched YACs were used to demonstrate that all four hY RNA genes reside on human chromosome 7.

Indexed as

Chromosomes, Human, Pair 7Base SequenceBlotting, SouthernChromosomes, Artificial, YeastCloning, MolecularDNA Restriction EnzymesGene LibraryHumansMolecular Sequence DataPolymerase Chain ReactionRestriction MappingRNARNA Polymerase IIIRNA, Small CytoplasmicTransfectionDNA Restriction EnzymesRNARNA Polymerase IIIRNA, Small Cytoplasmic

Identifiers

PMID7520568
PMCPMC310274
OpenAlexW2082825505

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.