Evidence map›Paper›PMID 7513081›Full record

ArticleNucleic acids research1994

A nuclear factor that binds purine-rich, single-stranded oligonucleotides derived from S1-sensitive elements upstream of the CFTR gene and the MUC1 gene.

M A Hollingsworth, C Closken, A Harris, C D McDonald, G S Pahwa, L J Maher

Abstract read
In one paragraph

Article in Nucleic acids research, 1994. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. MUC1, the renaissance molecule.Journal of mammary gland biology and neoplasia · 2001
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

M A HollingsworthEppley Institute for Research in Cancer and Allied Diseases, University of Nebraska Medical Center, Omaha 68198-6805.
C Closken
A Harris
C D McDonald
G S Pahwa
L J Maher

Funding

STUDIES ON THE POST-TRANSLATIONAL PROCESSING OF MUCIR01CA057362 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI HOLLINGSWORTH, MICHAEL A. · 1992 to 2012
$2.7M
MOLECULAR STUDIES OF MUCIN EXPRESSION IN CYSTIC FIBROSISR01DK044762 · NIDDK · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI HOLLINGSWORTH, MICHAEL A · 1991 to 1993
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CONTROL OF DNA TRANSCRIPTION BY RNA LIGANDSR29GM047814 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI MAHER, LOUIS JAMES · 1993 to 1997
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NCI NIH HHS CA57362NIDDK NIH HHS DK44762NIGMS NIH HHS GM47814
6 · The paper itself

Abstract

We have identified two regions of non-random purine/pyrimidine strand asymmetry that were nearly identical in sequence in the 5' flanking (promoter) regions of the human cystic fibrosis transmembrane conductance regulator (CFTR) gene and the human MUC1 gene. These regions contain perfect mirror repeat elements, a sequence motif previously found to be associated with the formation of H-DNA conformations. In this report we demonstrate that a single-stranded non-B DNA conformation exists at low pH in supercoiled plasmids containing the similar mirror repeat elements, and that S1 nuclease digestion maps the single-stranded region to the position of the mirror repeats. In addition, we identify a nuclear protein of approximately 27 kD that binds to single-stranded oligonucleotides corresponding to the purine-rich strand of this region, but not to the pyrimidine-rich strands or to double-stranded oligonucleotides with corresponding purine/pyrimidine strand asymmetry.

Indexed as

Base SequenceBinding, CompetitiveCystic FibrosisCystic Fibrosis Transmembrane Conductance RegulatorDNA, Single-StrandedHumansHydrogen-Ion ConcentrationMembrane GlycoproteinsMolecular Sequence DataMucin-1MucinsNuclear ProteinsNucleic Acid ConformationOligodeoxyribonucleotidesPurinesRepetitive Sequences, Nucleic AcidCFTR protein, humanCystic Fibrosis Transmembrane Conductance RegulatorDNA, Single-StrandedMembrane GlycoproteinsMucin-1MucinsNuclear ProteinsOligodeoxyribonucleotidesPurinesSingle-Strand Specific DNA and RNA EndonucleasesTrans-Activators

Identifiers

PMID7513081
PMCPMC523634

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.